Author: bugman
Date: Tue Mar 19 16:45:03 2013
New Revision: 18886
URL: http://svn.gna.org/viewcvs/relax?rev=18886&view=rev
Log:
Created 13 unit tests of the Internal._trim_sheet() internal structural
object method.
These are mirror the 13 unit tests of Internal._trim_helix().
Modified:
trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py
Modified: trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py?rev=18886&r1=18885&r2=18886&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py
(original)
+++ trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py Tue
Mar 19 16:45:03 2013
@@ -253,6 +253,197 @@
self.assertEqual(None, new_helix)
+ def test__trim_sheet1(self):
+ """1st test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+
+ # Residues deleted before the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[1, 2,
3, 22], res_data=res_data)
+
+ # Test that nothing has happened.
+ self.assertEqual(sheet, new_sheet)
+
+
+ def test__trim_sheet2(self):
+ """2nd test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+
+ # Residues deleted after the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[51,
52, 53], res_data=res_data)
+
+ # Test that nothing has happened.
+ self.assertEqual(sheet, new_sheet)
+
+
+ def test__trim_sheet3(self):
+ """3rd test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'LYS', 'A', 11, None, 'VAL', 'A', 17,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the start of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[8, 9,
10], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet4(self):
+ """4th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'ILE', 'A', 13, None, 'VAL', 'A', 17,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the start of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[8, 9,
10, 11, 12], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet5(self):
+ """5th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'ILE', 'A', 13, None, 'VAL', 'A', 17,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the start of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[8, 9,
10, 11, 12, 15], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet6(self):
+ """6th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'ILE', 'A', 13, None, 'VAL', 'A', 17,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the start of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[8, 9,
10, 11, 12, 30], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet7(self):
+ """7th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'GLU', 'A', 16,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the end of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[17,
18, 19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet8(self):
+ """8th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+
+ # Trim nothing.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[18,
19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(sheet, new_sheet)
+
+
+ def test__trim_sheet9(self):
+ """9th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'THR', 'A', 14,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the end of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[15,
16, 17, 18, 19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet10(self):
+ """10th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'THR', 'A', 14,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the end of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[11,
15, 16, 17, 18, 19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet11(self):
+ """11th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'LYS', 'A', 11, None, 'LEU', 'A', 15,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the both ends of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[9, 10,
16, 17, 18, 19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet12(self):
+ """12th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+ trimmed_sheet = [1, 'BET', 5, 'LYS', 'A', 11, None, 'LEU', 'A', 15,
None, 0, None, None, None, None, None, None, None, None, None, None]
+
+ # Trim the both ends of the sheet.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[9, 10,
13, 16, 17, 18, 19], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(trimmed_sheet, new_sheet)
+
+
+ def test__trim_sheet13(self):
+ """13th test of the Internal._trim_sheet() method."""
+
+ # The sheet metadata of the internal structural object.
+ sheet = [1, 'BET', 5, 'GLY', 'A', 10, None, 'VAL', 'A', 17, None, 0,
None, None, None, None, None, None, None, None, None, None]
+
+ # Trim everything.
+ res_data = {1: 'MET', 2: 'GLN', 3: 'ILE', 4: 'PHE', 5: 'VAL', 6:
'LYS', 7: 'THR', 8: 'LEU', 9: 'THR', 10: 'GLY', 11: 'LYS', 12: 'THR', 13:
'ILE', 14: 'THR', 15: 'LEU', 16: 'GLU', 17: 'VAL', 18: 'GLU', 19: 'PRO', 20:
'SER', 21: 'ASP', 22: 'THR', 23: 'ILE', 24: 'GLU', 25: 'ASN', 26: 'VAL', 27:
'LYS', 28: 'ALA', 29: 'LYS', 30: 'ILE', 31: 'GLN', 32: 'ASP', 33: 'LYS', 34:
'GLU'}
+ new_sheet = self.data._trim_sheet(sheet=sheet, trim_res_list=[1, 2,
3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,
24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35], res_data=res_data)
+
+ # Test the trimming.
+ self.assertEqual(None, new_sheet)
+
+
def test_atom_loop(self):
"""Test the Internal.atom_loop() method."""
r18886 - /trunk/test_suite/unit_tests/_generic_fns/_structure/test_internal.py