Author: bugman
Date: Wed Mar 20 22:55:12 2013
New Revision: 18928
URL: http://svn.gna.org/viewcvs/relax?rev=18928&view=rev
Log:
Added Epydoc hyperlink markup for the bug tracker in the system test
docstring where missing.
This is for a better API documentation (http://www.nmr-relax.com/api/).
Modified:
trunk/test_suite/system_tests/model_free.py
trunk/test_suite/system_tests/peak_lists.py
trunk/test_suite/system_tests/relax_data.py
trunk/test_suite/system_tests/relax_fit.py
Modified: trunk/test_suite/system_tests/model_free.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/model_free.py?rev=18928&r1=18927&r2=18928&view=diff
==============================================================================
--- trunk/test_suite/system_tests/model_free.py (original)
+++ trunk/test_suite/system_tests/model_free.py Wed Mar 20 22:55:12 2013
@@ -236,28 +236,28 @@
def test_bug_14872_unicode_selection(self):
- """Test catching bug #14872, the unicode string selection failure as
submitted by Olivier Serve."""
+ """Test catching U{bug #14872<https://gna.org/bugs/?14872>}, the
unicode string selection failure as submitted by Olivier Serve."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_14872_unicode_selection.py')
def test_bug_14941_local_tm_global_selection(self):
- """Test catching bug #14941, the local tm global model selection
problem as submitted by Mikaela Stewart (mikaela dot stewart att gmail dot
com)."""
+ """Test catching U{bug #14941<https://gna.org/bugs/?14941>}, the
local tm global model selection problem as submitted by Mikaela Stewart
(mikaela dot stewart att gmail dot com)."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_14941_local_tm_global_selection.py')
def test_bug_15050(self):
- """Test catching bug #15050, 'PipeContainer' object has no attribute
'diff_tensor' error as submitted by U{Tiago
Pais<https://gna.org/users/tpais>}."""
+ """Test catching U{bug #15050<https://gna.org/bugs/?15050>},
'PipeContainer' object has no attribute 'diff_tensor' error as submitted by
U{Tiago Pais<https://gna.org/users/tpais>}."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_15050.py')
def test_bugs_12582_12591_12607(self):
- """Test catching bugs #12582, #12591 and #12607 as submitted by
Chris Brosey."""
+ """Test catching bugs U{#12582<https://gna.org/bugs/?12582>},
U{#12591<https://gna.org/bugs/?12591>} and
U{#12607<https://gna.org/bugs/?12607>} as submitted by Chris Brosey."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bugs_12582_12591_12607.py')
@@ -267,14 +267,14 @@
def test_bug_18790(self):
- """Test catching bug #18790, the negative relaxation data RelaxError
reported by Vitaly Vostrikov."""
+ """Test catching U{bug #18790<https://gna.org/bugs/?18790>}, the
negative relaxation data RelaxError reported by Vitaly Vostrikov."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'model_free'+sep+'bug_18790_negative_error.py')
def test_bug_20213_asn_sidechain(self):
- """Bug #20213 catch, the model selection failure due to the presence
of Asp and Gln sidechain N spins."""
+ """U{Bug #20213<https://gna.org/bugs/?20213>} catch, the model
selection failure due to the presence of Asp and Gln sidechain N spins."""
# Create a temporary directory for dumping files.
ds.tmpdir = mkdtemp()
@@ -1113,6 +1113,13 @@
- S2 = 0.970
- te = 2048 ps
- Rex = 0.149 s^-1
+
+ Relevant links for this test are:
+ -
U{https://mail.gna.org/public/relax-devel/2009-05/msg00003.html}
+ -
U{https://mail.gna.org/public/relax-users/2011-01/msg00029.html}
+ - U{http://gna.org/bugs/?12573}
+ -
U{https://mail.gna.org/public/relax-users/2008-10/msg00089.html}
+ - U{http://gna.org/bugs/?14173}
"""
# Setup the data pipe for optimisation.
@@ -1349,6 +1356,13 @@
- S2 = 0.970
- te = 2048 ps
- Rex = 0.149 s^-1
+
+ Relevant links for this test are:
+ -
U{https://mail.gna.org/public/relax-devel/2009-05/msg00003.html}
+ -
U{https://mail.gna.org/public/relax-users/2011-01/msg00029.html}
+ - U{http://gna.org/bugs/?12573}
+ -
U{https://mail.gna.org/public/relax-users/2008-10/msg00089.html}
+ - U{http://gna.org/bugs/?14174}
"""
# Setup the data pipe for optimisation.
@@ -1603,6 +1617,11 @@
- S2 = 0.970
- te = 2048 ps
- Rex = 0.149 s^-1
+
+ Relevant links for this test are:
+ - U{http://gna.org/bugs/?12573}
+ -
U{https://mail.gna.org/public/relax-users/2008-10/msg00089.html}
+ - U{http://gna.org/bugs/?14175}
"""
# Setup the data pipe for optimisation.
@@ -1745,6 +1764,11 @@
- S2 = 0.970
- te = 2048 ps
- Rex = 0.149 s^-1
+
+ Relevant links for this test are:
+ - U{http://gna.org/bugs/?12573}
+ -
U{https://mail.gna.org/public/relax-users/2008-10/msg00089.html}
+ - U{http://gna.org/bugs/?14177}
"""
# Setup the data pipe for optimisation.
@@ -1887,6 +1911,11 @@
- S2 = 0.970
- te = 2048 ps
- Rex = 0.149 s^-1
+
+ Relevant links for this test are:
+ - U{http://gna.org/bugs/?12573}
+ -
U{https://mail.gna.org/public/relax-users/2008-10/msg00089.html}
+ - U{http://gna.org/bugs/?14176}
"""
# Setup the data pipe for optimisation.
Modified: trunk/test_suite/system_tests/peak_lists.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=18928&r1=18927&r2=18928&view=diff
==============================================================================
--- trunk/test_suite/system_tests/peak_lists.py (original)
+++ trunk/test_suite/system_tests/peak_lists.py Wed Mar 20 22:55:12 2013
@@ -58,7 +58,7 @@
def test_bug_17276_peak_lists(self):
- """Test catching bug #17276, the duplicated peak list reading
failure submitted by Leanne Minall."""
+ """Test catching U{bug #17276<https://gna.org/bugs/?17276>}, the
duplicated peak list reading failure submitted by Leanne Minall."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'bug_17276_peak_lists.py')
Modified: trunk/test_suite/system_tests/relax_data.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_data.py?rev=18928&r1=18927&r2=18928&view=diff
==============================================================================
--- trunk/test_suite/system_tests/relax_data.py (original)
+++ trunk/test_suite/system_tests/relax_data.py Wed Mar 20 22:55:12 2013
@@ -1,6 +1,6 @@
###############################################################################
#
#
-# Copyright (C) 2011-2012 Edward d'Auvergne
#
+# Copyright (C) 2011-2013 Edward d'Auvergne
#
#
#
# This file is part of the program relax (http://www.nmr-relax.com).
#
#
#
@@ -32,7 +32,7 @@
"""Class for testing various aspects specific to relaxation data back
calculation."""
def test_back_calc(self):
- """Test the back calculation of relaxation data from model-free
results."""
+ """Test the back calculation of relaxation data from model-free
results (U{bug #14941<https://gna.org/bugs/?14941>})."""
# Load the original state.
self.interpreter.state.load(state='sphere_trunc',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'bug_14941_local_tm_global_selection')
@@ -59,7 +59,7 @@
def test_back_calc_specific(self):
- """Test the back calculation of specific relaxation data from
model-free results."""
+ """Test the back calculation of specific relaxation data from
model-free results (U{bug #14941<https://gna.org/bugs/?14941>})."""
# Load the original state.
self.interpreter.state.load(state='sphere_trunc',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'bug_14941_local_tm_global_selection')
@@ -86,7 +86,7 @@
def test_back_calc_new(self):
- """Test the back calculation of new relaxation data from model-free
results."""
+ """Test the back calculation of new relaxation data from model-free
results (U{bug #14941<https://gna.org/bugs/?14941>})."""
# Load the original state.
self.interpreter.state.load(state='sphere_trunc',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'bug_14941_local_tm_global_selection')
@@ -113,7 +113,7 @@
def test_delete(self):
- """Test the relax_data.delete user function, replicating bug
#19785."""
+ """Test the relax_data.delete user function, replicating U{bug
#19785<https://gna.org/bugs/?19785>}."""
# Execute the script.
self.interpreter.run(script_file=status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'bug_19785_relax_data_delete.py')
Modified: trunk/test_suite/system_tests/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_fit.py?rev=18928&r1=18927&r2=18928&view=diff
==============================================================================
--- trunk/test_suite/system_tests/relax_fit.py (original)
+++ trunk/test_suite/system_tests/relax_fit.py Wed Mar 20 22:55:12 2013
@@ -1,6 +1,6 @@
###############################################################################
#
#
-# Copyright (C) 2006-2012 Edward d'Auvergne
#
+# Copyright (C) 2006-2013 Edward d'Auvergne
#
#
#
# This file is part of the program relax (http://www.nmr-relax.com).
#
#
#
@@ -105,7 +105,7 @@
def test_bug_12670_12679(self):
- """Test the relaxation curve fitting, replicating bug #12670 and bug
#12679."""
+ """Test the relaxation curve fitting, replicating U{bug
#12670<https://gna.org/bugs/?12670>} and U{bug
#12679<https://gna.org/bugs/?12679>}."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'1UBQ_relax_fit.py')
@@ -131,7 +131,7 @@
def test_bug_18789(self):
- """Test for zero errors in Grace plots, replicating bug #18789."""
+ """Test for zero errors in Grace plots, replicating U{bug
#18789<https://gna.org/bugs/?18789>}."""
# Execute the script.
self.script_exec(status.install_path +
sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'curve_fitting'+sep+'bug_18789_no_grace_errors.py')
@@ -157,7 +157,7 @@
def test_bug_19887_curvefit_fail(self):
- """Test for the failure of relaxation curve-fitting, replicating bug
#19887."""
+ """Test for the failure of relaxation curve-fitting, replicating
U{bug #19887<https://gna.org/bugs/?19887>}."""
# Execute the script.
try:
r18928 - in /trunk/test_suite/system_tests: model_free.py peak_lists.py relax_data.py relax_fit.py