r19079 - in /trunk: auto_analyses/ data_store/ docs/latex/ generic_fns/ gui/ gui/analyses/ gui/components/ gui/input_element...r19079 - in /trunk: auto_analyses/ data_store/ docs/latex/ generic_fns/ gui/ gui/analyses/ gui/components/ gui/input_element...Author: bugman Date: Sat Mar 23 20:25:55 2013 New Revision: 19079 URL: http://svn.gna.org/viewcvs/relax?rev=19079&view=rev Log: Renamed the generic_fns package to pipe_control. This huge change is part of the relax package layout redesign. Added: trunk/pipe_control/ - copied from r19078, trunk/generic_fns/ trunk/test_suite/unit_tests/_pipe_control/ - copied from r19078, trunk/test_suite/unit_tests/_generic_fns/ Removed: trunk/generic_fns/ trunk/test_suite/unit_tests/_generic_fns/ Modified: trunk/auto_analyses/dauvergne_protocol.py trunk/auto_analyses/frame_order.py trunk/auto_analyses/noe.py trunk/auto_analyses/relax_fit.py trunk/auto_analyses/stereochem_analysis.py trunk/data_store/__init__.py trunk/data_store/interatomic.py trunk/data_store/mol_res_spin.py trunk/data_store/pipe_container.py trunk/docs/latex/develop.tex trunk/gui/__init__.py trunk/gui/analyses/__init__.py trunk/gui/analyses/auto_model_free.py trunk/gui/analyses/auto_noe.py trunk/gui/analyses/auto_rx_base.py trunk/gui/analyses/base.py trunk/gui/analyses/results_analysis.py trunk/gui/components/molecule.py trunk/gui/components/spectrum.py trunk/gui/controller.py trunk/gui/export_bmrb.py trunk/gui/input_elements/spin_id.py trunk/gui/pipe_editor.py trunk/gui/relax_gui.py trunk/gui/results_viewer.py trunk/gui/spin_viewer/containers.py trunk/gui/spin_viewer/frame.py trunk/gui/spin_viewer/tree.py trunk/lib/geometry/rotations.py trunk/lib/io.py trunk/lib/structure/rotor.py trunk/opendx/base_map.py trunk/opendx/isosurface_3D.py trunk/pipe_control/align_tensor.py trunk/pipe_control/angles.py trunk/pipe_control/bmrb.py trunk/pipe_control/bruker.py trunk/pipe_control/dasha.py trunk/pipe_control/diffusion_tensor.py trunk/pipe_control/dipole_pair.py trunk/pipe_control/eliminate.py trunk/pipe_control/exp_info.py trunk/pipe_control/fix.py trunk/pipe_control/frq.py trunk/pipe_control/grace.py trunk/pipe_control/interatomic.py trunk/pipe_control/minimise.py trunk/pipe_control/model_selection.py trunk/pipe_control/mol_res_spin.py trunk/pipe_control/molmol.py trunk/pipe_control/monte_carlo.py trunk/pipe_control/noesy.py trunk/pipe_control/palmer.py trunk/pipe_control/paramag.py trunk/pipe_control/pcs.py trunk/pipe_control/pymol_control.py trunk/pipe_control/rdc.py trunk/pipe_control/relax_data.py trunk/pipe_control/results.py trunk/pipe_control/selection.py trunk/pipe_control/sequence.py trunk/pipe_control/spectrum.py trunk/pipe_control/state.py trunk/pipe_control/structure/api_base.py trunk/pipe_control/structure/geometric.py trunk/pipe_control/structure/internal.py trunk/pipe_control/structure/main.py trunk/pipe_control/structure/mass.py trunk/pipe_control/structure/scientific.py trunk/pipe_control/structure/superimpose.py trunk/pipe_control/temperature.py trunk/pipe_control/value.py trunk/prompt/uf_objects.py trunk/sample_scripts/model_free/final_data_extraction.py trunk/sample_scripts/model_free/generate_ri.py trunk/sample_scripts/model_free/grace_ri_data_correlation.py trunk/sample_scripts/model_free/table_csv.py trunk/sample_scripts/model_free/table_latex.py trunk/sample_scripts/relax_curve_diff.py trunk/specific_analyses/api_base.py trunk/specific_analyses/api_common.py trunk/specific_analyses/consistency_tests.py trunk/specific_analyses/frame_order.py trunk/specific_analyses/hybrid.py trunk/specific_analyses/jw_mapping.py trunk/specific_analyses/model_free/__init__.py trunk/specific_analyses/model_free/bmrb.py trunk/specific_analyses/model_free/macro_base.py trunk/specific_analyses/model_free/main.py trunk/specific_analyses/model_free/mf_minimise.py trunk/specific_analyses/model_free/results.py trunk/specific_analyses/n_state_model.py trunk/specific_analyses/noe/main.py trunk/specific_analyses/relax_fit.py trunk/specific_analyses/setup.py trunk/target_functions/ens_pivot_finder.py trunk/target_functions/frame_order/__init__.py trunk/test_suite/gui_tests/base_classes.py trunk/test_suite/gui_tests/bruker.py trunk/test_suite/gui_tests/model_free.py trunk/test_suite/gui_tests/noe.py trunk/test_suite/gui_tests/rx.py trunk/test_suite/gui_tests/state.py trunk/test_suite/shared_data/align_data/CaM/generate_data.py trunk/test_suite/shared_data/align_data/CaM/pre_bleach.py trunk/test_suite/shared_data/align_data/metal_pos_opt/generate.py trunk/test_suite/shared_data/align_data/missing_data/generate_missing.py trunk/test_suite/shared_data/align_data/monte_carlo_testing/generate_data.py trunk/test_suite/shared_data/align_data/paramagnetic/generate_data.py trunk/test_suite/shared_data/align_data/population_model/generate.py trunk/test_suite/shared_data/bruker_files/relax_fit_pdc_err.py trunk/test_suite/shared_data/diffusion_tensor/generate_data.py trunk/test_suite/shared_data/model_free/sphere/create_ri.py trunk/test_suite/shared_data/pcs_data/generate_model.py trunk/test_suite/system_tests/angles.py trunk/test_suite/system_tests/base_classes.py trunk/test_suite/system_tests/bruker.py trunk/test_suite/system_tests/consistency_tests.py trunk/test_suite/system_tests/dasha.py trunk/test_suite/system_tests/diffusion_tensor.py trunk/test_suite/system_tests/generic.py trunk/test_suite/system_tests/jw_mapping.py trunk/test_suite/system_tests/model_elimination.py trunk/test_suite/system_tests/model_free.py trunk/test_suite/system_tests/model_selection.py trunk/test_suite/system_tests/n_state_model.py trunk/test_suite/system_tests/noe.py trunk/test_suite/system_tests/noe_restraints.py trunk/test_suite/system_tests/palmer.py trunk/test_suite/system_tests/pcs.py trunk/test_suite/system_tests/peak_lists.py trunk/test_suite/system_tests/pipes.py trunk/test_suite/system_tests/rdc.py trunk/test_suite/system_tests/relax_data.py trunk/test_suite/system_tests/relax_fit.py trunk/test_suite/system_tests/scripts/model_free/generate_ri.py trunk/test_suite/system_tests/scripts/model_free/latex_mf_table.py trunk/test_suite/system_tests/scripts/n_state_model/A_to_chi.py trunk/test_suite/system_tests/scripts/n_state_model/align_fit.py trunk/test_suite/system_tests/scripts/n_state_model/metal_pos_opt.py trunk/test_suite/system_tests/scripts/n_state_model/monte_carlo_testing.py trunk/test_suite/system_tests/scripts/n_state_model/paramag_align_fit.py trunk/test_suite/system_tests/scripts/n_state_model/paramag_centre_fit.py trunk/test_suite/system_tests/scripts/n_state_model/pcs_to_rdc.py trunk/test_suite/system_tests/selection.py trunk/test_suite/system_tests/state.py trunk/test_suite/system_tests/structure.py trunk/test_suite/unit_tests/__init__.py trunk/test_suite/unit_tests/_data_store/test_align_tensor.py trunk/test_suite/unit_tests/_lib/_geometry/test_rotations.py trunk/test_suite/unit_tests/_pipe_control/_structure/test___init__.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_api_base.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_internal.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_pdb_read.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_pdb_write.py trunk/test_suite/unit_tests/_pipe_control/_structure/test_scientific.py trunk/test_suite/unit_tests/_pipe_control/molecule.py trunk/test_suite/unit_tests/_pipe_control/residue.py trunk/test_suite/unit_tests/_pipe_control/spin.py trunk/test_suite/unit_tests/_pipe_control/test___init__.py trunk/test_suite/unit_tests/_pipe_control/test_align_tensor.py trunk/test_suite/unit_tests/_pipe_control/test_diffusion_tensor.py trunk/test_suite/unit_tests/_pipe_control/test_mol_res_spin.py trunk/test_suite/unit_tests/_pipe_control/test_molecule.py trunk/test_suite/unit_tests/_pipe_control/test_pipes.py trunk/test_suite/unit_tests/_pipe_control/test_relax_data.py trunk/test_suite/unit_tests/_pipe_control/test_residue.py trunk/test_suite/unit_tests/_pipe_control/test_selection.py trunk/test_suite/unit_tests/_pipe_control/test_sequence.py trunk/test_suite/unit_tests/_pipe_control/test_spin.py trunk/test_suite/unit_tests/_pipe_control/test_state.py trunk/test_suite/unit_tests/_pipe_control/test_value.py trunk/test_suite/unit_tests/_prompt/test_align_tensor.py trunk/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py trunk/test_suite/unit_tests/_target_functions/_frame_order/test_matrix_ops.py trunk/test_suite/unit_tests/align_tensor_testing_base.py trunk/test_suite/unit_tests/base_classes.py trunk/test_suite/unit_tests/diffusion_tensor_testing_base.py trunk/test_suite/unit_tests/minimisation_testing_base.py trunk/test_suite/unit_tests/molecule_testing_base.py trunk/test_suite/unit_tests/relax_data_testing_base.py trunk/test_suite/unit_tests/residue_testing_base.py trunk/test_suite/unit_tests/sequence_testing_base.py trunk/test_suite/unit_tests/spin_testing_base.py trunk/test_suite/unit_tests/state_testing_base.py trunk/test_suite/unit_tests/structure_testing_base.py trunk/test_suite/unit_tests/value_testing_base.py trunk/user_functions/align_tensor.py trunk/user_functions/angles.py trunk/user_functions/bmrb.py trunk/user_functions/bruker.py trunk/user_functions/consistency_tests.py trunk/user_functions/dasha.py trunk/user_functions/deselect.py trunk/user_functions/diffusion_tensor.py trunk/user_functions/dipole_pair.py trunk/user_functions/domain.py trunk/user_functions/dx.py trunk/user_functions/eliminate.py trunk/user_functions/fix.py trunk/user_functions/frq.py trunk/user_functions/grace.py trunk/user_functions/interatomic.py trunk/user_functions/jw_mapping.py trunk/user_functions/minimisation.py trunk/user_functions/model_selection.py trunk/user_functions/molecule.py trunk/user_functions/molmol.py trunk/user_functions/monte_carlo.py trunk/user_functions/noe.py trunk/user_functions/objects.py trunk/user_functions/palmer.py trunk/user_functions/paramag.py trunk/user_functions/pcs.py trunk/user_functions/pipe.py trunk/user_functions/pymol_control.py trunk/user_functions/rdc.py trunk/user_functions/relax_data.py trunk/user_functions/relax_fit.py trunk/user_functions/reset.py trunk/user_functions/residue.py trunk/user_functions/results.py trunk/user_functions/script.py trunk/user_functions/select.py trunk/user_functions/sequence.py trunk/user_functions/spectrum.py trunk/user_functions/spin.py trunk/user_functions/state.py trunk/user_functions/structure.py trunk/user_functions/temperature.py trunk/user_functions/value.py trunk/user_functions/vmd.py [This mail would be too long, it was shortened to contain the URLs only.] Modified: trunk/auto_analyses/dauvergne_protocol.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/dauvergne_protocol.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/auto_analyses/frame_order.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/frame_order.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/auto_analyses/noe.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/noe.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/auto_analyses/relax_fit.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/relax_fit.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/auto_analyses/stereochem_analysis.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/stereochem_analysis.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/data_store/__init__.py URL: http://svn.gna.org/viewcvs/relax/trunk/data_store/__init__.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/data_store/interatomic.py URL: http://svn.gna.org/viewcvs/relax/trunk/data_store/interatomic.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/data_store/mol_res_spin.py URL: http://svn.gna.org/viewcvs/relax/trunk/data_store/mol_res_spin.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/data_store/pipe_container.py URL: http://svn.gna.org/viewcvs/relax/trunk/data_store/pipe_container.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/docs/latex/develop.tex URL: http://svn.gna.org/viewcvs/relax/trunk/docs/latex/develop.tex?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/__init__.py URL: 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http://svn.gna.org/viewcvs/relax/trunk/gui/analyses/results_analysis.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/components/molecule.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/components/molecule.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/components/spectrum.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/components/spectrum.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/controller.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/controller.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/export_bmrb.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/export_bmrb.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/input_elements/spin_id.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/input_elements/spin_id.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/pipe_editor.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/pipe_editor.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/relax_gui.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/relax_gui.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/results_viewer.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/results_viewer.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/spin_viewer/containers.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/spin_viewer/containers.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/spin_viewer/frame.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/spin_viewer/frame.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/gui/spin_viewer/tree.py URL: http://svn.gna.org/viewcvs/relax/trunk/gui/spin_viewer/tree.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/lib/geometry/rotations.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/geometry/rotations.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/lib/io.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/io.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/lib/structure/rotor.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/structure/rotor.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/opendx/base_map.py URL: http://svn.gna.org/viewcvs/relax/trunk/opendx/base_map.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/opendx/isosurface_3D.py URL: http://svn.gna.org/viewcvs/relax/trunk/opendx/isosurface_3D.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/align_tensor.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/align_tensor.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/angles.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/angles.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/bmrb.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/bmrb.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/bruker.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/bruker.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/dasha.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/dasha.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/diffusion_tensor.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/diffusion_tensor.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/dipole_pair.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/dipole_pair.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/eliminate.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/eliminate.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/exp_info.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/exp_info.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/fix.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/fix.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/frq.py URL: 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trunk/pipe_control/rdc.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/rdc.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/relax_data.py URL: http://svn.gna.org/viewcvs/relax/trunk/pipe_control/relax_data.py?rev=19079&r1=19078&r2=19079&view=diff Modified: trunk/pipe_control/results.py [... 521 lines stripped ...]