Author: bugman
Date: Sat Mar 23 20:46:03 2013
New Revision: 19080
URL: http://svn.gna.org/viewcvs/relax?rev=19080&view=rev
Log:
Fixes for the generic_fns to pipe_control renaming.
Modified:
trunk/test_suite/shared_data/frame_order/cam/CoM.py
trunk/test_suite/shared_data/frame_order/cam/generate_base.py
trunk/test_suite/shared_data/frame_order/cam/iso_cone/generate_distribution.py
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/generate_distribution.py
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse/generate_distribution.py
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/generate_distribution.py
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order_matrix.py
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/generate_distribution.py
trunk/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/ave_pos_back_calc.py
Modified: trunk/test_suite/shared_data/frame_order/cam/CoM.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/CoM.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
--- trunk/test_suite/shared_data/frame_order/cam/CoM.py (original)
+++ trunk/test_suite/shared_data/frame_order/cam/CoM.py Sat Mar 23 20:46:03
2013
@@ -2,7 +2,7 @@
# The CoM is not the real one as only the N, H, and Ca2+ atoms are used.
# relax module imports.
-from generic_fns.structure.mass import centre_of_mass
+from pipe_control.structure.mass import centre_of_mass
# The PDB files.
Modified: trunk/test_suite/shared_data/frame_order/cam/generate_base.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/generate_base.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
--- trunk/test_suite/shared_data/frame_order/cam/generate_base.py (original)
+++ trunk/test_suite/shared_data/frame_order/cam/generate_base.py Sat Mar 23
20:46:03 2013
@@ -30,10 +30,10 @@
import sys
# relax module imports.
-from generic_fns.angles import wrap_angles
-from generic_fns.frame_order import print_frame_order_2nd_degree
-from generic_fns.mol_res_spin import spin_loop
-from generic_fns.interatomic import interatomic_loop
+from pipe_control.angles import wrap_angles
+from pipe_control.frame_order import print_frame_order_2nd_degree
+from pipe_control.mol_res_spin import spin_loop
+from pipe_control.interatomic import interatomic_loop
from lib.geometry.coord_transform import cartesian_to_spherical
from lib.algebra.kronecker_product import kron_prod
from lib.geometry.rotations import axis_angle_to_R, R_to_euler_zyz
Modified:
trunk/test_suite/shared_data/frame_order/cam/iso_cone/generate_distribution.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/iso_cone/generate_distribution.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/iso_cone/generate_distribution.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/iso_cone/generate_distribution.py
Sat Mar 23 20:46:03 2013
@@ -9,7 +9,7 @@
from numpy import dot, transpose
# relax module imports.
-from generic_fns.angles import wrap_angles
+from pipe_control.angles import wrap_angles
from lib.geometry.rotations import R_random_hypersphere, R_to_tilt_torsion
# Base module import.
Modified:
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order_matrix.py
Sat Mar 23 20:46:03 2013
@@ -5,7 +5,7 @@
# relax module imports.
from lib.algebra.kronecker_product import kron_prod
-from generic_fns.frame_order import print_frame_order_2nd_degree
+from pipe_control.frame_order import print_frame_order_2nd_degree
# Load the matrices.
Modified:
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/generate_distribution.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/generate_distribution.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/generate_distribution.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/generate_distribution.py
Sat Mar 23 20:46:03 2013
@@ -9,7 +9,7 @@
from numpy import dot, transpose
# relax module imports.
-from generic_fns.angles import wrap_angles
+from pipe_control.angles import wrap_angles
from lib.geometry.rotations import R_random_hypersphere, R_to_tilt_torsion
# Base module import.
Modified:
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse/generate_distribution.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse/generate_distribution.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse/generate_distribution.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse/generate_distribution.py
Sat Mar 23 20:46:03 2013
@@ -9,7 +9,7 @@
from numpy import dot, transpose
# relax module imports.
-from generic_fns.angles import wrap_angles
+from pipe_control.angles import wrap_angles
from lib.geometry.rotations import R_random_hypersphere, R_to_tilt_torsion
# Base module import.
Modified:
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/generate_distribution.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/generate_distribution.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/generate_distribution.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse2/generate_distribution.py
Sat Mar 23 20:46:03 2013
@@ -9,7 +9,7 @@
from numpy import dot, transpose
# relax module imports.
-from generic_fns.angles import wrap_angles
+from pipe_control.angles import wrap_angles
from lib.geometry.rotations import R_random_hypersphere, R_to_tilt_torsion
# Base module import.
Modified:
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order_matrix.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order_matrix.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order_matrix.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_free_rotor/frame_order_matrix.py
Sat Mar 23 20:46:03 2013
@@ -1,6 +1,6 @@
from numpy import array, float64, zeros
-from generic_fns.frame_order import print_frame_order_2nd_degree
+from pipe_control.frame_order import print_frame_order_2nd_degree
from lib.algebra.kronecker_product import kron_prod
Modified:
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/generate_distribution.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/generate_distribution.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/generate_distribution.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/pseudo_ellipse_torsionless/generate_distribution.py
Sat Mar 23 20:46:03 2013
@@ -9,7 +9,7 @@
from numpy import dot, transpose
# relax module imports.
-from generic_fns.angles import wrap_angles
+from pipe_control.angles import wrap_angles
from lib.geometry.rotations import R_random_hypersphere, R_to_tilt_torsion
# Base module import.
Modified:
trunk/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/ave_pos_back_calc.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/ave_pos_back_calc.py?rev=19080&r1=19079&r2=19080&view=diff
==============================================================================
---
trunk/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/ave_pos_back_calc.py
(original)
+++
trunk/test_suite/shared_data/frame_order/cam/rotor2/pcs_only/ave_pos_back_calc.py
Sat Mar 23 20:46:03 2013
@@ -1,7 +1,7 @@
# Script for calculation RDCs and PCSs for the rigid frame order model.
# relax module imports.
-from generic_fns.mol_res_spin import spin_loop
+from pipe_control.mol_res_spin import spin_loop
# Create a data pipe.
r19080 - in /trunk/test_suite/shared_data/frame_order/cam: ./ iso_cone/ iso_cone_torsionless/ pseudo_ellipse/ pseudo_ellipse...