r19145 - in /trunk: lib/structure/represent/ pipe_control/structure/ test_suite/shared_data/structures/diff_tensors/ user_fu... -- March 24, 2013 - 20:57

Author: bugman
Date: Sun Mar 24 20:57:55 2013
New Revision: 19145

URL: http://svn.gna.org/viewcvs/relax?rev=19145&view=rev
Log:
Shifted the diffusion tensor structural object code to 
lib.structure.represent.diffusion_tensor.

The user function routes to 
pipe_control.structure.main.create_diff_tensor_pdb(), which pulls the
tensor info out of the data store, and then calls the diffusion_tensor() 
function of
lib.structure.represent.diffusion_tensor to create the representation, writes 
out a PDB file, and
finally adds the file to the data pipe's results file list.


Added:
    trunk/lib/structure/represent/diffusion_tensor.py
      - copied, changed from r19143, trunk/pipe_control/structure/geometric.py
Modified:
    trunk/lib/structure/represent/__init__.py
    trunk/pipe_control/structure/geometric.py
    trunk/pipe_control/structure/main.py
    trunk/test_suite/shared_data/structures/diff_tensors/ellipsoid.pdb
    trunk/test_suite/shared_data/structures/diff_tensors/sphere.pdb
    trunk/test_suite/shared_data/structures/diff_tensors/spheroid.pdb
    trunk/user_functions/structure.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: trunk/lib/structure/represent/__init__.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/lib/structure/represent/__init__.py?rev=19145&r1=19144&r2=19145&view=diff

Copied: trunk/lib/structure/represent/diffusion_tensor.py (from r19143, 
trunk/pipe_control/structure/geometric.py)
URL: 
http://svn.gna.org/viewcvs/relax/trunk/lib/structure/represent/diffusion_tensor.py?p2=trunk/lib/structure/represent/diffusion_tensor.py&p1=trunk/pipe_control/structure/geometric.py&r1=19143&r2=19145&rev=19145&view=diff

Modified: trunk/pipe_control/structure/geometric.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/geometric.py?rev=19145&r1=19144&r2=19145&view=diff

Modified: trunk/pipe_control/structure/main.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/main.py?rev=19145&r1=19144&r2=19145&view=diff

Modified: trunk/test_suite/shared_data/structures/diff_tensors/ellipsoid.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/diff_tensors/ellipsoid.pdb?rev=19145&r1=19144&r2=19145&view=diff

Modified: trunk/test_suite/shared_data/structures/diff_tensors/sphere.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/diff_tensors/sphere.pdb?rev=19145&r1=19144&r2=19145&view=diff

Modified: trunk/test_suite/shared_data/structures/diff_tensors/spheroid.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/diff_tensors/spheroid.pdb?rev=19145&r1=19144&r2=19145&view=diff

Modified: trunk/user_functions/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/user_functions/structure.py?rev=19145&r1=19144&r2=19145&view=diff