Author: bugman
Date: Fri Oct 11 15:37:38 2013
New Revision: 21074
URL: http://svn.gna.org/viewcvs/relax?rev=21074&view=rev
Log:
Rearranged the 'Implemented models' subsection of the dispersion chapter of
the manual.
Modified:
branches/relax_disp/docs/latex/dispersion.tex
Modified: branches/relax_disp/docs/latex/dispersion.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion.tex?rev=21074&r1=21073&r2=21074&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion.tex (original)
+++ branches/relax_disp/docs/latex/dispersion.tex Fri Oct 11 15:37:38 2013
@@ -62,14 +62,21 @@
\subsection{Implemented models}
\label{sect: dispersion: implemented models}
-A number of analytic models are supported within relax.
-If the model you are interested in is not available, see Section~\ref{sect:
dispersion: model tutorial} on page~\pageref{sect: dispersion: model
tutorial} for how new models can be added to relax.
-The analytic models are dependant upon whether the data originates from a
CPMG-type or $\Ronerho$-type experiment.
-For the CPMG-type experiments, the models currently supported are:
+A number of analytic and numeric models are supported within relax.
+These cover CPMG-type, $\Ronerho$-type, and multi-quantum (MQ) CPMG-type
experiments.
+If the model you are interested in is not available, please see
Section~\ref{sect: dispersion: model tutorial} on page~\pageref{sect:
dispersion: model tutorial} for how you can add new models to relax.
+
+Models which are independent of the experiment type include:
\begin{description}
-\item[`R2eff':]\index{relaxation dispersion!R2eff model} This is the model
used to determine the $\Rtwoeff$ values and errors required as the base data
for all other models. See Section~\ref{sect: dispersion: R2eff model} on
page~\pageref{sect: dispersion: R2eff model}.
+\item[`R2eff':]\index{relaxation dispersion!R2eff model} This is the model
used to determine the $\Rtwoeff$ or $\Ronerho$ values and errors required as
the base data for all other models. See Section~\ref{sect: dispersion: R2eff
model} on page~\pageref{sect: dispersion: R2eff model}.
\item[`No Rex':]\index{relaxation dispersion!No Rex model} This is the
model for no chemical exchange being present. See Section~\ref{sect:
dispersion: No Rex model} on page~\pageref{sect: dispersion: No Rex model}.
+\end{description}
+
+
+For the CPMG-type experiments, the analytic models currently supported are:
+
+\begin{description}
\item[`LM63':]\index{relaxation dispersion!LM63 model} The original
\citet{LuzMeiboom63} 2-site fast exchange equation with parameters
$\{\Rtwozero, \dots, \Phiex, \kex\}$. See Section~\ref{sect: dispersion:
LM63 model} on page~\pageref{sect: dispersion: LM63 model}.
\item[`LM63 3-site':]\index{relaxation dispersion!LM63 3-site model} The
original \citet{LuzMeiboom63} 3-site fast exchange equation with parameters
$\{\Rtwozero, \dots, \PhiexB, \kB, \PhiexC, \kC\}$. The equations of
\citet{OConnell09} can be used to approximately convert the parameters
$\{\PhiexB, \kB, \PhiexC, \kC\}$ to more biologically relevant parameters.
See Section~\ref{sect: dispersion: LM63 3-site model} on page~\pageref{sect:
dispersion: LM63 3-site model}.
\item[`CR72':]\index{relaxation dispersion!CR72 model} The reduced
\citet{CarverRichards72} 2-site equation for all time scales whereby the
simplification $\RtwozeroA = \RtwozeroB$ is assumed. It has the parameters
$\{\Rtwozero, \dots, \pA, \dw, \kex\}$. See Section~\ref{sect: dispersion:
CR72 model} on page~\pageref{sect: dispersion: CR72 model}.
@@ -79,25 +86,9 @@
Applicable in the limit of slow exchange, when $|\RtwozeroA - \RtwozeroB|
\ll \kAB, \kBA \ll 1/\taucpmg$. $2*\taucpmg$ is the time between successive
180 degree pulses. Parameters are $\{\RtwozeroA, \dots, \dw, \kAB\}$. See
Section~\ref{sect: dispersion: TSMFK01 model} on page~\pageref{sect:
dispersion: TSMFK01 model}.
\end{description}
-For the $\Ronerho$-type experiment, the currently supported models are:
+For the CPMG-type experiments, the numeric models currently supported are:
\begin{description}
-\item[`R2eff':]\index{relaxation dispersion!R2eff model} This is the same
model model as for the CPMG-type experiments except that the $\Ronerho$ and
not $\Rtwoeff$ values are determined. See Section~\ref{sect: dispersion:
R2eff model} on page~\pageref{sect: dispersion: R2eff model}.
-\item[`No Rex':]\index{relaxation dispersion!No Rex model} This is the
model for no chemical exchange being present. See Section~\ref{sect:
dispersion: No Rex model} on page~\pageref{sect: dispersion: No Rex model}.
-\item[`M61':]\index{relaxation dispersion!M61 model} The \citet{Meiboom61}
2-site fast exchange equation for on-resonance data with parameters
$\{\Ronerhoprime, \dots, \Phiex, \kex\}$. See Section~\ref{sect: dispersion:
M61 model} on page~\pageref{sect: dispersion: M61 model}.
-\item[`DPL94':]\index{relaxation dispersion!DPL94 model} The
\citet{Davis94} 2-site fast exchange equation for off-resonance data with
parameters $\{\Ronerhoprime, \dots, \Phiex, \kex\}$. See Section~\ref{sect:
dispersion: DPL94 model} on page~\pageref{sect: dispersion: DPL94 model}.
-\item[`M61 skew':]\index{relaxation dispersion!M61 skew model} The
\citet{Meiboom61} 2-site equation for all time scales with $\pA \gg \pB$ and
with parameters $\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$. This model is
disabled by default in the dispersion auto-analysis. See Section~\ref{sect:
dispersion: M61 skew model} on page~\pageref{sect: dispersion: M61 skew
model}.
-\item[`TP02':]\index{relaxation dispersion!TP02 model} The
\citet{TrottPalmer02} 2-site equation for all time scales with parameters
$\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$. See Section~\ref{sect:
dispersion: TP02 model} on page~\pageref{sect: dispersion: TP02 model}.
-\end{description}
-
-
-Like the analytic models, a number of numerical models are supported within
relax.
-These models are also dependant upon whether the data originates from a
CPMG-type or $\Ronerho$-type experiment.
-For the CPMG-type experiments, the models currently supported are:
-
-\begin{description}
-\item[`R2eff':]\index{relaxation dispersion!R2eff model} This is the model
used to determine the $\Rtwoeff$ values and errors required as the base data
for all other models. See Section~\ref{sect: dispersion: R2eff model} on
page~\pageref{sect: dispersion: R2eff model}.
-\item[`No Rex':]\index{relaxation dispersion!No Rex model} This is the
model for no chemical exchange being present. See Section~\ref{sect:
dispersion: No Rex model} on page~\pageref{sect: dispersion: No Rex model}.
\item[`NS CPMG 2-site 3D':]\index{relaxation dispersion!NS CPMG 2-site 3D
model} The reduced model for 2-site exchange using 3D magnetisation vectors
whereby the simplification $\RtwozeroA = \RtwozeroB$ is assumed. It has the
parameters $\{\Rtwozero, \dots, \pA, \dw, \kex\}$. See Section~\ref{sect:
dispersion: NS CPMG 2-site 3D model} on page~\pageref{sect: dispersion: NS
CPMG 2-site 3D model}.
\item[`NS CPMG 2-site 3D full':]\index{relaxation dispersion!NS CPMG 2-site
3D full model} The full model for 2-site exchange using 3D magnetisation
vectors with parameters $\{\RtwozeroA, \RtwozeroB, \dots, \pA, \dw, \kex\}$.
See Section~\ref{sect: dispersion: NS CPMG 2-site 3D full model} on
page~\pageref{sect: dispersion: NS CPMG 2-site 3D full model}.
\item[`NS CPMG 2-site star':]\index{relaxation dispersion!NS CPMG 2-site
star model} The reduced model for 2-site exchange using complex conjugate
matrices whereby the simplification $\RtwozeroA = \RtwozeroB$ is assumed. It
has the parameters $\{\Rtwozero, \dots, \pA, \dw, \kex\}$. See
Section~\ref{sect: dispersion: NS CPMG 2-site star model} on
page~\pageref{sect: dispersion: NS CPMG 2-site star model}.
@@ -106,16 +97,21 @@
\end{description}
-For the $\Ronerho$-type experiment, the models currently supported are:
+For the $\Ronerho$-type experiments, the analytic models currently supported
are:
\begin{description}
-\item[`R2eff':]\index{relaxation dispersion!R2eff model} This is the model
used to determine the $\Rtwoeff$ values and errors required as the base data
for all other models. See Section~\ref{sect: dispersion: R2eff model} on
page~\pageref{sect: dispersion: R2eff model}.
-\item[`No Rex':]\index{relaxation dispersion!No Rex model} This is the
model for no chemical exchange being present. See Section~\ref{sect:
dispersion: No Rex model} on page~\pageref{sect: dispersion: No Rex model}.
+\item[`M61':]\index{relaxation dispersion!M61 model} The \citet{Meiboom61}
2-site fast exchange equation for on-resonance data with parameters
$\{\Ronerhoprime, \dots, \Phiex, \kex\}$. See Section~\ref{sect: dispersion:
M61 model} on page~\pageref{sect: dispersion: M61 model}.
+\item[`DPL94':]\index{relaxation dispersion!DPL94 model} The
\citet{Davis94} 2-site fast exchange equation for off-resonance data with
parameters $\{\Ronerhoprime, \dots, \Phiex, \kex\}$. See Section~\ref{sect:
dispersion: DPL94 model} on page~\pageref{sect: dispersion: DPL94 model}.
+\item[`M61 skew':]\index{relaxation dispersion!M61 skew model} The
\citet{Meiboom61} 2-site equation for all time scales with $\pA \gg \pB$ and
with parameters $\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$. This model is
disabled by default in the dispersion auto-analysis. See Section~\ref{sect:
dispersion: M61 skew model} on page~\pageref{sect: dispersion: M61 skew
model}.
+\item[`TP02':]\index{relaxation dispersion!TP02 model} The
\citet{TrottPalmer02} 2-site equation for all time scales with parameters
$\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$. See Section~\ref{sect:
dispersion: TP02 model} on page~\pageref{sect: dispersion: TP02 model}.
+\end{description}
+
+
+For the $\Ronerho$-type experiments, the numeric models currently supported
are:
+
+\begin{description}
\item[`NS R1rho 2-site':]\index{relaxation dispersion!NS R1rho 2-site model}
The model for 2-site exchange using 3D magnetisation vectors. It has the
parameters $\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$. See
Section~\ref{sect: dispersion: NS R1rho 2-site model} on page~\pageref{sect:
dispersion: NS R1rho 2-site model}.
\end{description}
-
-
-
% Dispersion model summary.
r21074 - /branches/relax_disp/docs/latex/dispersion.tex