Author: bugman
Date: Mon Nov 4 11:20:26 2013
New Revision: 21372
URL: http://svn.gna.org/viewcvs/relax?rev=21372&view=rev
Log:
Added the chemex software to the dispersion chapter of the user manual.
Modified:
branches/relax_disp/docs/latex/dispersion.tex
branches/relax_disp/docs/latex/dispersion_software.tex
Modified: branches/relax_disp/docs/latex/dispersion.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion.tex?rev=21372&r1=21371&r2=21372&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion.tex (original)
+++ branches/relax_disp/docs/latex/dispersion.tex Mon Nov 4 11:20:26 2013
@@ -1336,6 +1336,7 @@
\item[GUARDD] Ian Kleckner's dispersion software at
\url{http://code.google.com/p/guardd/}. The reference is
\citet{KlecknerFoster12}.
\item[ShereKhan] See the web server at \url{http://sherekhan.bionmr.org/}.
The reference is \citet{Mazur13}.
\item[GLOVE] Peter Wright's dispersion software at
\url{http://www.scripps.edu/wright/}. The reference is \citet{Sugase13}.
+\item[chemex] Guillaume Bouvignies' dispersion software which can be found
at \url{http://code.google.com/p/chemex/}.
\end{description}
There is currently support in relax for generating the input files for
CPMGFit, CATIA, NESSY, and ShereKhan and for running CPMGFit and CATIA from
within relax.
@@ -1345,5 +1346,4 @@
Please see the websites of the respective software for an up to date list of
features.
If you do find deficiencies in this table, it would be appreciated if you
could communicate these on the relax users mailing list at ``relax-users at
gna.org''\index{mailing list!relax-users}.
-\clearpage
\input{dispersion_software}
Modified: branches/relax_disp/docs/latex/dispersion_software.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion_software.tex?rev=21372&r1=21371&r2=21372&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion_software.tex (original)
+++ branches/relax_disp/docs/latex/dispersion_software.tex Mon Nov 4
11:20:26 2013
@@ -5,7 +5,7 @@
\setlength\LTcapwidth{\textwidth}
\setlength\LTleft{0pt}
\setlength\LTright{0pt}
-\begin{longtable}{l@{\extracolsep{\fill}}cccccccc}
+\begin{longtable}{l@{\extracolsep{\fill}}ccccccccc}
% Caption.
\caption[Dispersion software comparison.]{Comparison of the features for the
different dispersion software.}
@@ -15,7 +15,7 @@
\\
\toprule
\vspace{25pt} \\
- & \begin{rotate}{45}CPMGFit\end{rotate} &
\begin{rotate}{45}cpmg\_fit\end{rotate} & \begin{rotate}{45}CATIA\end{rotate}
& \begin{rotate}{45}NESSY\end{rotate} & \begin{rotate}{45}GUARDD\end{rotate}
& \begin{rotate}{45}ShereKhan\end{rotate} &
\begin{rotate}{45}GLOVE\end{rotate} & \begin{rotate}{45}relax\end{rotate}
\hspace{5pt} \\
+ & \begin{rotate}{45}CPMGFit\end{rotate} &
\begin{rotate}{45}cpmg\_fit\end{rotate} & \begin{rotate}{45}CATIA\end{rotate}
& \begin{rotate}{45}NESSY\end{rotate} & \begin{rotate}{45}GUARDD\end{rotate}
& \begin{rotate}{45}ShereKhan\end{rotate} &
\begin{rotate}{45}GLOVE\end{rotate} & \begin{rotate}{45}chemex\end{rotate} &
\begin{rotate}{45}relax\end{rotate} \hspace{5pt} \\
% & CPMGFit & CATIA & NESSY & GUARDD & ShereKhan & GLOVE & relax \\
\midrule
\endhead
@@ -27,7 +27,7 @@
% Label.
\label{table: dispersion software}
-%est row & \yes & \yes & \yes & \yes & \yes & \yes & \yes
\\
+%est row & \yes & \yes & \yes & \yes & \yes & \yes & \yes
& \yes & \yes \\
% The models.
\vspace{-5pt} \\
@@ -36,53 +36,54 @@
\vspace{-5pt} \\
Base models \\
\cmidrule(lr){1-1}
-$\Rtwoeff/\Ronerhoprime$ & \no & \no & \no & \yes & \yes & \yes & \yes
& \yes \\
-No Rex & \no & \yes & \no & \yes & \no & \no & \yes
& \yes \\
+$\Rtwoeff/\Ronerhoprime$ & \no & \no & \no & \yes & \yes & \yes & \yes
& \no & \yes \\
+No Rex & \no & \yes & \no & \yes & \no & \no & \yes
& \no & \yes \\
\vspace{-5pt} \\
Single quantum (SQ) CPMG-type \\
\cmidrule(lr){1-1}
-LM63 & \yes & \no & \no & \yes & \no & \yes & \yes
& \yes \\
-LM63 3-site & \yes & \no & \no & \yes & \no & \no & \no
& \yes \\
-CR72 & \yes & \yes & \no & \yes & \no & \yes & \yes
& \yes \\
-IT99 & \yes & \no & \no & \no & \no & \no & \yes
& \yes \\
-TSMFK01 & \no & \no & \no & \no & \no & \no & \no
& \yes \\
-NS 2-site & \no & \yes & \yes & \no & \no & \yes & \no
& \yes \\
+LM63 & \yes & \no & \no & \yes & \no & \yes & \yes
& \no & \yes \\
+LM63 3-site & \yes & \no & \no & \yes & \no & \no & \no
& \no & \yes \\
+CR72 & \yes & \yes & \no & \yes & \no & \yes & \yes
& \no & \yes \\
+IT99 & \yes & \no & \no & \no & \no & \no & \yes
& \no & \yes \\
+TSMFK01 & \no & \no & \no & \no & \no & \no & \no
& \no & \yes \\
+NS 2-site & \no & \yes & \yes & \no & \no & \yes & \no
& \no & \yes \\
\vspace{-5pt} \\
Multiple quantum (MQ) CPMG-type \\
\cmidrule(lr){1-1}
-MQ CR72 & \no & \yes & \no & \no & \yes & \no & \yes
& \yes \\
+MQ CR72 & \no & \yes & \no & \no & \yes & \no & \yes
& \no & \yes \\
\vspace{-5pt} \\
MMQ (SQ, ZQ, DQ, \& MQ) CPMG-type \\
\cmidrule(lr){1-1}
-NS 2-site & \no & \yes & \no & \no & \no & \no & \no
& \yes \\
-NS 3-site (linear) & \no & \yes & \no & \no & \no & \no & \no
& \no \\
-NS 3-site (branched) & \no & \yes & \no & \no & \no & \no & \no
& \no \\
+NS 2-site & \no & \yes & \no & \no & \no & \no & \no
& \no & \yes \\
+NS 3-site (linear) & \no & \yes & \no & \no & \no & \no & \no
& \no & \no \\
+NS 3-site (branched) & \no & \yes & \no & \no & \no & \no & \no
& \no & \no \\
\vspace{-5pt} \\
$\Ronerho$-type \\
\cmidrule(lr){1-1}
-M61 & \no & \no & \no & \no & \no & \no & \no
& \yes \\
-DPL94 & \no & \no & \no & \no & \no & \no & \no
& \yes \\
-TP02 & \no & \yes & \no & \no & \no & \no & \no
& \yes \\
-NS 2-site & \no & \yes & \no & \no & \no & \no & \no
& \yes \\
-NS 3-site (linear) & \no & \yes & \no & \no & \no & \no & \no
& \no \\
-NS 3-site (branched) & \no & \yes & \no & \no & \no & \no & \no
& \no \\
+M61 & \no & \no & \no & \no & \no & \no & \no
& \no & \yes \\
+DPL94 & \no & \no & \no & \no & \no & \no & \no
& \no & \yes \\
+TP02 & \no & \yes & \no & \no & \no & \no & \no
& \no & \yes \\
+NS 2-site & \no & \yes & \no & \no & \no & \no & \no
& \no & \yes \\
+NS 3-site (linear) & \no & \yes & \no & \no & \no & \no & \no
& \no & \no \\
+NS 3-site (branched) & \no & \yes & \no & \no & \no & \no & \no
& \no & \no \\
\midrule
\vspace{-5pt} \\
\textbf{General features} \\
\cmidrule(lr){1-1}
-Graphical user interface (GUI) & \no & \no & \no & \yes
& \yes & \no & \no & \yes \\
-Web user interface (Web UI) & \no & \no & \no & \no
& \no & \yes & \no & \no \\
-Scripting user interface (Script UI) & \no & \no & \yes & \no
& \no & \yes & \yes & \yes \\
-Parallelisation via MPI for running on clusters & \no & \no & \no & \no
& \no & \no & \no & \yes \\
-Off-resonance effects (CPMG-type data) & \no & \no & \yes & \no
& \no & \no & \no & \no \\
-Off-resonance effects ($\Ronerho$-type data) & \no & \yes & \no & \no
& \no & \no & \no & \yes \\
-Van't Hoff analysis & \no & \no & \no & \yes
& \no & \no & \no & \no \\
-ZZ exchange & \no & \no & \no & \no
& \no & \no & \no & \no \\
-HD exchange & \no & \no & \no & \no
& \no & \no & \no & \no \\
+Graphical user interface (GUI) & \no & \no & \no & \yes
& \yes & \no & \no & \no & \yes \\
+Web user interface (Web UI) & \no & \no & \no & \no
& \no & \yes & \no & \no & \no \\
+Scripting user interface (Script UI) & \no & \no & \yes & \no
& \no & \yes & \yes & \no & \yes \\
+Parallelisation via MPI for running on clusters & \no & \no & \no & \no
& \no & \no & \no & \no & \yes \\
+Off-resonance effects (CPMG-type data) & \no & \no & \yes & \no
& \no & \no & \no & \no & \no \\
+Off-resonance effects ($\Ronerho$-type data) & \no & \yes & \no & \no
& \no & \no & \no & \no & \yes \\
+Support for CEST-type data & \no & \no & \no & \no
& \no & \no & \no & \yes & \no \\
+Van't Hoff analysis & \no & \no & \no & \yes
& \no & \no & \no & \no & \no \\
+ZZ exchange & \no & \no & \no & \no
& \no & \no & \no & \no & \no \\
+HD exchange & \no & \no & \no & \no
& \no & \no & \no & \no & \no \\
\end{longtable}
\end{small}
\end{center}
r21372 - in /branches/relax_disp/docs/latex: dispersion.tex dispersion_software.tex