r27261 - /trunk/lib/sequence_alignment/needleman_wunsch.py -- January 21, 2015 - 15:59

Author: bugman
Date: Wed Jan 21 15:59:28 2015
New Revision: 27261

URL: http://svn.gna.org/viewcvs/relax?rev=27261&view=rev
Log:
Fix for the Needleman-Wunsch sequence alignment algorithm when the 
substitution matrix is absent.


Modified:
    trunk/lib/sequence_alignment/needleman_wunsch.py

Modified: trunk/lib/sequence_alignment/needleman_wunsch.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/lib/sequence_alignment/needleman_wunsch.py?rev=27261&r1=27260&r2=27261&view=diff
==============================================================================
--- trunk/lib/sequence_alignment/needleman_wunsch.py    (original)
+++ trunk/lib/sequence_alignment/needleman_wunsch.py    Wed Jan 21 15:59:28 
2015
@@ -28,7 +28,7 @@
 # Default scores.
 SCORE_MATCH = 1
 SCORE_MISMATCH = -1
-SCORE_GAP_PENALTY = -1
+SCORE_GAP_PENALTY = 1
 SCORES = zeros(3, int16)
 
 # Indices.