Re: Representing the Brownian rotational diffusion tensor in Molmol, etc. -- October 27, 2006 - 17:30

On 10/28/06, Douglas Kojetin <douglas.kojetin@xxxxxxxxx> wrote:
> Hi Edward-
>
> I am able to feed commands into PyMOL from Tcl/Tk scripts through the
> use of UNIX pipes.  From within the Tcl/Tk script, a pipe is opened
> to PyMOL, and the script sends commands to PyMOL.  I can tell PyMOL
> to open a PDB file, display it in a certain way (cartoon, ribbon),
> highlight certain atoms or residues (by sticks, spheres, etc.), color
> them, etc.  I've never tried writing images, but I don't think it
> would be too difficult.  Is this the type of functionality you are
> looking to incorporate into relax?

This is exactly what is needed.  I didn't realise it accepted commands
from STDIN, I told you I didn't look very hard!  That makes things
very easy to implement.  Is there documentation for this interface?
Are they python commands you send?

Edward