Edward d'Auvergne wrote:
> Hi,
>
> relax now operates fine on my machine.
>
> Cheers,
>
> Edward
>
much celebration!
do you have any thoughts on the question of grid searches and monte
carlo runs and where to impliment them
regards
gary
>
> On 3/30/07, Gary S. Thompson <garyt@xxxxxxxxxxxxxxx> wrote:
>
>> Edward d'Auvergne wrote:
>>
>> > There were two problems I encountered. The first was the import error
>> > when mpi4py is not installed.
>>
>> there should be no need for this mpi4py should only be loaded when you
>> request mpi4py on the command line, the module is loaded on demand. This
>> is why modules processor and command have bee created to remove the
>> dependencies present in the alpha version of the code between the
>> generic multiprocessor objects and mpi4py_processor
>>
>> > This could possibly be handled by
>> > setting a flag in the importing module, printing a RelaxWarning
>> > message, and the defaulting to the uniprocessor code. The second
>> > problem is that when mpi4py is installed but 'mpirun-lam' is not
>> > running, I get the message:
>> >
>> > [edward@p2800 multi_processor]$ ./relax
>> >
>>
-----------------------------------------------------------------------------
>>
>> >
>> >
>> > It seems that there is no lamd running on the host p2800.
>> >
>> > This indicates that the LAM/MPI runtime environment is not operating.
>> > The LAM/MPI runtime environment is necessary for MPI programs to run
>> > (the MPI program tired to invoke the "MPI_Init" function).
>> >
>> > Please run the "lamboot" command the start the LAM/MPI runtime
>> > environment. See the LAM/MPI documentation for how to invoke
>> > "lamboot" across multiple machines.
>> >
>>
-----------------------------------------------------------------------------
>>
>> >
>> > [edward@p2800 multi_processor]$
>> >
>> > This should only happen if the user asks to run in MPI mode, normal
>> > relax operation should remain as is.
>> >
>> indeed everything should remian the same for the uni processor mode
>> using either
>>
>> relax
>> or
>> relax --multi uni (which is equivalent to the above)
>>
>> I have now done some updates to give r3249 which should cure these
>> problems (and does on all the computers I have) could you give the
>> latest revision a try
>>
>> I have done a check for MPI and mpi4py in all the files in the branch
>> and only mpi4py contains these strings now so unless something very
>> weird it should all be fixed
>>
>> regards
>> gary
>>
>> > Cheers,
>> >
>> > Edward
>> >
>> >
>> > On 3/30/07, gary thompson <garyt.and.sarahb@xxxxxxxxx> wrote:
>> >
>> >> On 3/29/07, Gary S. Thompson <garyt@xxxxxxxxxxxxxxx> wrote:
>> >> > Edward d'Auvergne wrote:
>> >> [snip]
>> >>
>> >> > > One
>> >> > > question I have is will there be a separate model-free minimise()
>> >> > > function for normal and MPI operation?
>> >> >
>> >> >
>> >> > no the non mpi version just calls the uniprocessor processor
>> >> > multi.uni_processor. The current uniprocessor implimentation is
>> non
>> >> > optimal by space on single processor machines but will have the
>> same
>> >> > overhead by time as any other implimentations (barring the use of
>> >> > command cacheing which may save to object creation overhead)
>> >> >
>> >> > > Another point is that I can't
>> >> > > run the code in the branch without having MPI up and running.
>> >> > >
>> >> > >
>> >> > you should be able to run relax without a --multi command line and
>> >> > without an mpirun and the uniprocessor implimentations should run.
>> >> > However, currently when I run it I get The dependency 'mpi4py'
>> has not
>> >> > been installed is that the problem you have?? I will investigate
>> >> the problem
>> >> >
>> >> >
>> >> correction I have just gone home and run the command on the same
>> >> machine remotely and get no messages about dependencies!. if this is
>> >> the error you get please tell me.
>> >>
>> >> Ah revelation (realtime messaging and debugging!) in uni_processor I
>> >> am using multi.mpi4py_processor.Result_command which will load the
>> >> mpi4py_processor module which will result in load of mpi4py
>> (lines 14
>> >> onwards in mpi4py_processor). This is just an oversight due to me
>> >> being lazy and winging it while testing corrections on the way ;-)
>> >>
>> >>
>> >> regards
>> >> gary
>> >>
>> >>
>> >> > >> obviously there is consdiderable code cleanup and documentation
>> >> still
>> >> > >> to be done and also implimentation of processors for
>> threading and
>> >> > >> ssh tunnels
>> >> > >
>> >> > >
>> >> > > The code is shaping up nicely. With a good clean up it should be
>> >> > > relatively easy to port to the 1.3 line later on.
>> >> >
>> >> > yep time to go from alpha to beta, glad you like it
>> >> >
>> >> > > 1It looks like a
>> >> > > great framework for the threading and grid computing via ssh
>> >> tunnels.
>> >> > >
>> >> > indeed thats the intention and design goal ;-)
>> >> >
>> >> > > Cheers,
>> >> > >
>> >> > > Edward
>> >> > >
>> >> >
>> >> > regards
>> >> > gary
>> >> >
>> >> > > _______________________________________________
>> >> > > relax (http://nmr-relax.com)
>> >> > >
>> >> > > This is the relax-devel mailing list
>> >> > > relax-devel@xxxxxxx
>> >> > >
>> >> > > To unsubscribe from this list, get a password
>> >> > > reminder, or change your subscription options,
>> >> > > visit the list information page at
>> >> > > https://mail.gna.org/listinfo/relax-devel
>> >> > >
>> >> > > .
>> >> > >
>> >> >
>> >> >
>> >> > --
>> >> > -------------------------------------------------------------------
>> >> > Dr Gary Thompson
>> >> > Astbury Centre for Structural Molecular Biology,
>> >> > University of Leeds, Astbury Building,
>> >> > Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
>> >> > email: garyt@xxxxxxxxxxxxxxx Fax +44-113-2331407
>> >> > -------------------------------------------------------------------
>> >> >
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > relax (http://nmr-relax.com)
>> >> >
>> >> > This is the relax-devel mailing list
>> >> > relax-devel@xxxxxxx
>> >> >
>> >> > To unsubscribe from this list, get a password
>> >> > reminder, or change your subscription options,
>> >> > visit the list information page at
>> >> > https://mail.gna.org/listinfo/relax-devel
>> >> >
>> >>
>> >
>> > .
>> >
>>
>>
>> --
>> -------------------------------------------------------------------
>> Dr Gary Thompson
>> Astbury Centre for Structural Molecular Biology,
>> University of Leeds, Astbury Building,
>> Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
>> email: garyt@xxxxxxxxxxxxxxx Fax +44-113-2331407
>> -------------------------------------------------------------------
>>
>>
>>
>
> .
>
--
-------------------------------------------------------------------
Dr Gary Thompson
Astbury Centre for Structural Molecular Biology,
University of Leeds, Astbury Building,
Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
email: garyt@xxxxxxxxxxxxxxx Fax +44-113-2331407
-------------------------------------------------------------------
Re: r3243 - in /branches/multi_processor: ./ multi/ prompt/ specific_fns/