[bug #12607] RelaxError: Grid search size too large -- November 18, 2008 - 00:28

URL:
  <http://gna.org/bugs/?12607>

                 Summary: RelaxError: Grid search size too large
                 Project: relax
            Submitted by: None
            Submitted on: Tuesday 11/18/2008 at 00:28 CET
                Category: relax's source code
                Severity: 3 - Normal
                Priority: 5 - Normal
                  Status: None
                 Privacy: Public
             Assigned to: None
         Originator Name: Chris Brosey
        Originator Email: chris.a.brosey@xxxxxxxxxxxxxx
             Open/Closed: Open
         Discussion Lock: Any
                 Release: Repository: 1.3 line
        Operating System: GNU/Linux

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Details:

Greetings,

In running the full_analysis.py script for the ‘sphere’ model, I have
encountered an error during optimization of the diffusion tensor, primarily
that the size of the grid search is too large (see attached traceback and
output logs).  I am using experimental input data of my own (~246 residues)
that has been formatted to match the test files that I have used previously. 
The only alteration to the script after a successful ‘local_tm’ run was to
specify ‘sphere’ as the diffusion model.  This error does not occur when I
run the test files from /test_suite/shared_data/model_free/S2…0.149, so I am
not sure what is going on.  The reference pdb I am using is the output of the
Palmer r2r1_diffusion script.

I am attaching two files: (1) Traceback.log with output from the --debug
option and (2) relax_sphere.log with general output from the run.  Many
thanks!



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File Attachments:


-------------------------------------------------------
Date: Tuesday 11/18/2008 at 00:28 CET  Name: Traceback.log  Size: 2kB   By:
None

<http://gna.org/bugs/download.php?file_id=5018>
-------------------------------------------------------
Date: Tuesday 11/18/2008 at 00:28 CET  Name: relax_sphere.log  Size: 36kB  
By: None

<http://gna.org/bugs/download.php?file_id=5019>

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