mailRe: BMRB diffusion tensor saveframes.


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Posted by Eldon Ulrich on November 19, 2009 - 00:26:
Hi,

The suggestions for the tensor saveframe overall look fine. Instead of including the shape of the tensor in the '.Details' tag or the '.Speroid_type' tag, I would suggest creating a tag '_Tensor_list.Tensor_shape' tag with enumerations like 'isotropic,' 'anisotropic,' 'rhombic,' 'anisotropic prolate,' and others. A full list of tags for the saveframe is given below. I hope I have them all in there. I think having one general saveframe for tensors is fine and then in one file using separate tensor saveframes where appropriate would work. The list of tags in the loop has become quite long, but only those relevant to the specific type of tensor need to be used.

The tensor saveframe would go in supercategory 8 for structure and the Shielding_tensor saveframe will be obsoleted.

Thanks,
Eldon



save_<tensor>
_Tensor_list.Sf_category
_Tensor_list.Sf_framecode
_Tensor_list.Entry_ID
_Tensor_list.Sf_ID
_Tensor_list.ID
_Tensor_list.Tensor_type
_Tensor_list.Tensor_shape
_Tensor_list.Matrix_val_units
_Tensor_list.Isotropic_val_type
_Tensor_list.Angle_units
_Tensor_list.Isotropic_val_formula
_Tensor_list.Anisotropic_val_formula
_Tensor_list.Rhombic_val_formula
_Tensor_list.Euler_angle_type
_Tensor_list.Data_file_name
_Tensor_list.Details

loop_
_Tensor.ID
_Tensor.Calc_type_ID
_Tensor.Assembly_atom_ID
_Tensor.Entity_assembly_ID
_Tensor.Entity_ID
_Tensor.Comp_index_ID
_Tensor.Seq_ID
_Tensor.Comp_ID
_Tensor.Atom_ID
_Tensor.Atom_type
_Tensor.Atom_isotope_number

_Tensor.Axial_sym_axis_polar_angle
_Tensor.Axial_sym_axis_aximuthal_angle

_Tensor.Isotropic_val
_Tensor.Anisotropic_val
_Tensor.Rhombic_val

_Tensor.Euler_angle_alpha
_Tensor.Euler_angle_beta
_Tensor.Euler_angle_gamma

_Tensor.Isotropic_comp_1_1_val
_Tensor.Isotropic_comp_2_2_val
_Tensor.Isotropic_comp_3_3_val

_Tensor.Anti_sym_comp_1_2_val
_Tensor.Anti_sym_comp_1_3_val
_Tensor.Anti_sym_comp_2_3_val

_Tensor.Sym_traceless_comp_1_1_val
_Tensor.Sym_traceless_comp_1_2_val
_Tensor.Sym_traceless_comp_1_3_val
_Tensor.Sym_traceless_comp_2_2_val
_Tensor.Sym_traceless_comp_2_3_val

_Tensor.Reduceable_matrix_1_1_val
_Tensor.Reduceable_matrix_1_2_val
_Tensor.Reduceable_matrix_1_3_val
_Tensor.Reduceable_matrix_2_1_val
_Tensor.Reduceable_matrix_2_2_val
_Tensor.Reduceable_matrix_2_3_val
_Tensor.Reduceable_matrix_3_1_val
_Tensor.Reduceable_matrix_3_2_val
_Tensor.Reduceable_matrix_3_3_val

_Tensor.Auth_entity_assembly_ID
_Tensor.Auth_seq_ID
_Tensor.Auth_comp_ID
_Tensor.Auth_atom_ID

_Tensor.Sf_ID
_Tensor.Entry_ID
_Tensor.Tensor_list_ID

stop_

save_



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