Re: [bug #18554] dauvergne protocol sample script -- September 22, 2011 - 10:50

Dear Maddy,

Due to the large number of changes between relax 1.3.11 and the main
1.3 line, this problem has effectively healed itself!  Are you able to
test the 1.3 line to see if the problem really has disappeared?
Otherwise, soon I will be releasing relax 1.3.13 with a new GUI design
which could be used for testing.

Cheers,

Edward



On 24 August 2011 14:36, anonymous <NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
> URL:
>  <http://gna.org/bugs/?18554>
>
>                 Summary: dauvergne protocol sample script
>                 Project: relax
>            Submitted by: None
>            Submitted on: Wed 24 Aug 2011 12:36:22 PM UTC
>                Category: relax sample scripts
>                Severity: 3 - Normal
>                Priority: 5 - Normal
>                  Status: None
>                 Privacy: Public
>             Assigned to: None
>         Originator Name: Madeleine Strickland
>        Originator Email: m.strickland@xxxxxxxxxxxxx
>             Open/Closed: Open
>         Discussion Lock: Any
>                 Release: 1.3.11
>        Operating System: GNU/Linux
>
>    _______________________________________________________
>
> Details:
>
> Since ri_label has been replaced with ri_id and ri_type in 1.3.11, the
> program needs to be updated to change what is expected of the 13 elements
> described by 'RELAX_DATA' as has been done for 'relax_data.read'.  Also, the
> script dauvergen_protocol.py needs to be updated to reflect this.  I think
> this is the only script which uses 'RELAX_DATA'?
>
> See error below.
>
> > ------------------------------
> > None       2033       HIS        None       N
> > None       2034       HIS        None       N
> > None       2035       HIS        None       N
> > None       2036       HIS        None       N
> > None       2037       HIS        None       N
> > None       2038       HIS        None       N
> > Traceback (most recent call last):
> >  File "/usr/local/bin/relax", line 7, in <module>
> >    relax.start()
> >  File "/usr/local/relax/relax.py", line 80, in start
> >    Relax(mode)
> >  File "/usr/local/relax/relax.py", line 149, in __init__
> >    self.interpreter.run(self.script_file)
> >  File "/usr/local/relax/prompt/interpreter.py", line 297, in run
> >    return run_script(intro=self.__intro_string, local=locals(),
> > script_file=script_file, quit=self.__quit_flag,
> > show_script=self.__show_script,
> > raise_relax_error=self.__raise_relax_error)
> >  File "/usr/local/relax/prompt/interpreter.py", line 606, in run_script
> >    return console.interact(intro, local, script_file, quit,
> > show_script=show_script, raise_relax_error=raise_relax_error)
> >  File "/usr/local/relax/prompt/interpreter.py", line 492, in
> interact_script
> >    exec_script(script_file, local)
> >  File "/usr/local/relax/prompt/interpreter.py", line 380, in exec_script
> >    runpy.run_module(module, globals)
> >  File "/usr/local/lib/python2.6/runpy.py", line 140, in run_module
> >    fname, loader, pkg_name)
> >  File "/usr/local/lib/python2.6/runpy.py", line 34, in _run_code
> >    exec code in run_globals
> >  File
> "/home/ms4225/nmr_data/IGF2R/dynamics/relax/chicken/FINALC_110823_relax11/full_analysis_localtm.py",
> > line 199, in <module>
> >    dAuvergne_protocol(diff_model=DIFF_MODEL, mf_models=MF_MODELS,
> > local_tm_models=LOCAL_TM_MODELS, pdb_file=PDB_FILE, seq_args=SEQ_ARGS,
> > het_name=HET_NAME, attached_name=ATTACHED_NAME, relax_data=RELAX_DATA,
> > unres=UNRES, exclude=EXCLUDE, bond_length=BOND_LENGTH, csa=CSA,
> > hetnuc=HETNUC, proton=PROTON, grid_inc=GRID_INC, min_algor=MIN_ALGOR,
> > mc_num=MC_NUM, conv_loop=CONV_LOOP)
> >  File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 228,
> > in __init__
> >    self.execute()
> >  File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 556,
> > in execute
> >    self.multi_model(local_tm=True)
> >  File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 821,
> > in multi_model
> >    self.interpreter.relax_data.read(ri_label=data[0], frq_label=data[1],
> > frq=data[2], file=data[3], dir=data[4], mol_name_col=data[5],
> > res_num_col=data[6], res_name_col=data[7], spin_num_col=data[8],
> > spin_name_col=data[9], data_col=data[10], error_col=data[11],
> > sep=data[12])
> > TypeError: read() got an unexpected keyword argument 'ri_label'
>
>
>
>
>
>    _______________________________________________________
>
> Reply to this item at:
>
>  <http://gna.org/bugs/?18554>
>
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