Re: [bug #20674] UnboundLocalError in consistency_tests.py -- March 28, 2013 - 22:16

Hi,

The best way would be to read the manual.  Sebastien Morin has written
a nice guide with step-by-step instructions on what you need to do in
the manual.  You will need to read this as there are some manual steps
which relax does not automate for you which you should be aware of.
You should also read Sebastien's paper on the subject
(http://dx.doi.org/10.1007/s10858-009-9381-4).

Regards,

Edward


On 28 March 2013 21:10,  <mengjun.xue@xxxxxxxxxxxxxxxxxxxx> wrote:
> Hi Edward,
>
> Thanks. I have submitted the pdb file. I understand that the consistency
> test is for 2 field nmr data, for example, by comparing the J(0) at 500 MHz
> and J(0) at 700 MHz, so I loaded the two field data when using
> consistency_tests.py. I am confused that if one field data is loaded in
> consistency_tests.py, how can consistency_tests.py check the consistency
> between NMR data at 500 MHz and NMR data at 700 MHz? Thank you.
>
> With best regards,
>
> Mengjun
>
>
>
>
>
> Quoting Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
>
> > Hi again,
> >
> > I was wondering if you have read the consistency testing part of the
> > relax manual written by Sebastien Morin (the person who implemented
> > this analysis).  Specifically this section:
> >
> >
> > http://www.nmr-relax.com/manual/Consistency_testing_script_mode_relaxation_data_lo.html
> >
> > Note the text, "For this analysis, only data for a single field
> > strength can be loaded".  This may possibly be the source of some of
> > your problems.
> >
> > Regards,
> >
> > Edward
> >
> >
> >
> > On 28 March 2013 20:02, Edward d'Auvergne <edward@xxxxxxxxxxxxx> wrote:
> > > Hi Mengjun,
> > >
> > > Could you also attach the PDB file?  I need it to be able to run the
> > > script and replicate the problem.
> > >
> > > Cheers,
> > >
> > > Edward
> > >
> > >
> > >
> > > On 28 March 2013 16:39, anonymous <NO-REPLY.INVALID-ADDRESS@xxxxxxx>
> > > wrote:
> > > > Additional Item Attachment, bug #20674 (project relax):
> > > >
> > > > File name: T1 dhp 700.txt                 Size:74 KB
> > > > File name: T2 dhp 500.txt                 Size:67 KB
> > > > File name: T2 dhp 700.txt                 Size:68 KB
> > > > File name: logconsistency                 Size:371 KB
> > > >
> > > >
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> > > >
> > > >   <http://gna.org/bugs/?20674>
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