It should be possible to do this, but note that the 'time' name error
has absolutely nothing to do with this. There are three separate bugs
here:
- RelaxError: The Value element is read only, cannot set the value 'auto'.
- NameError: global name 'time' is not defined.
- Setting the relaxation time period for an experiment if the spectra
loading wizard is cancelled. All the user functions of the wizard
should be presented.
The first two can be part of the current bug #21076
(http://gna.org/bugs/?21076). The last should be its own bug report.
For testing this, the
test_suite/shared_data/dispersion/Hansen/relax_results/final_state.bz2
file can be opened in the GUI, the pipe editor window opened (via the
View menu for example), the base pipe right clicked on, and then the
'Associate with a new auto-analysis' entry clicked on. Right clicking
on any of the spectra list entries shows that the
relax_disp.relax_time user function is not present in the pop-up menu.
When creating a new report, please add a link to this message in the
Gmane thread (go to
http://thread.gmane.org/gmane.science.nmr.relax.devel/4417, click on
the correct message, then click on <<< [thread] >>> down the bottom to
go to the correct link).
For me, the fixes are trivial. This is because I know the code in
question very well. But I would like to give you the opportunity to
solve these problems as it will be a great teaching experience. You
will become much more familiar with the code layout of relax and
afterwards you will be in a much better position for being a relax
developer, as you will be better able to solve problems in your own
code. You will also be in a better position to solve problems in the
GUI or other UIs as your students encounter them - as students always
do things in ways you do not expect and find things you would never
encounter yourself - and then you could make fixes on the spot for
them and then push the fixes upstream.
Cheers,
Edward
On 28 August 2013 09:49, Troels Emtekær Linnet <tlinnet@xxxxxxxxx> wrote:
How would you add to the "right-click" menu, the possibility to add
Relaxation dispersion CPMG constant time delay T (in s).
to the experiment?
Troels Emtekær Linnet
2013/8/28 Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
Hi,
The NameError with 'time' is a clear bug. It is only in the
relax_disp branch. I can again let you try to find the solution, if
you like. And again, it is a one line fix - I know the solution
already. This is not an issue of a CPMG constant delay time, but just
a simple typo.
Regards,
Edward
On 27 August 2013 21:03, Troels Emtekær Linnet <tlinnet@xxxxxxxxx> wrote:
How about, the following error message,
when trying to define the CPMG frequence.
NameError: global name 'time' is not defined
I guess there needs to be added the CPMG constant delay time for the
spectra.
But, when you right click, there is no shortcut to add the
# Relaxation dispersion CPMG constant time delay T (in s).
relax_disp.relax_time(spectrum_id=current_id, time=time_T2)
And should time_T2 not appear from the list in the GUI?
Troels Emtekær Linnet
2013/8/27 Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
Hi Troels,
If you like, I'll first let you try to find the source of the problem.
Note it is in the relax trunk. The key part is in the error message,
specifically the 'read only' part. If you would like hints, just ask.
Regards,
Edward
On 27 August 2013 17:10, Edward d Auvergne
<NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
Update of bug #21076 (project relax):
Category: relax's source code => GUI
Status: None => Confirmed
Release: Branches => Repository: trunk
Operating System: GNU/Linux => All systems
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Re: [bug #21076] When loading a multi-spectra NMRPipe seriesTab file through the GUI, several Error messages occur.