mail[sr #3112] unable to upload PDB


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Posted by stefano ciurli on February 08, 2014 - 11:41:
URL:
  <http://gna.org/support/?3112>

                 Summary: unable to upload PDB
                 Project: relax
            Submitted by: stefanociurli
            Submitted on: Sat 08 Feb 2014 10:41:02 AM UTC
                Category: None
                Priority: 5 - Normal
                Severity: 3 - Normal
                  Status: None
                 Privacy: Private
             Assigned to: None
        Originator Email: 
             Open/Closed: Open
         Discussion Lock: Any
        Operating System: Mac OS

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Details:

Hello,
following my previous email, this is the log message I get.
Please help!
SC


relax>
structure.read_pdb(file='/Users/stefano/Desktop/13-BpUreE-NMR/Manuscript/Figure
7 - Dynamics/relax/BpUreE_apo_model_full.pdb', dir=None, read_mol=None,
set_mol_name='SpUreE_SC', read_model=None, set_model_num=None, alt_loc=None,
merge=False)

Internal relax PDB parser.
Opening the file '/Users/stefano/Desktop/13-BpUreE-NMR/Manuscript/Figure 7 -
Dynamics/relax/BpUreE_apo_model_full.pdb' for reading.
Traceback (most recent call last):
  File "gui/interpreter.pyc", line 303, in run
  File "pipe_control/structure/main.pyc", line 722, in read_pdb
  File "lib/structure/internal/object.pyc", line 1840, in load_pdb
IndexError: list index out of range




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