Re: [sr #3124] Grace graphs production for R1rho analysis with R2_eff as function of Omega_eff -- March 17, 2014 - 14:44

Hi Edward.

Yes, that would be a very very nice representation of the script.
That would correspond very well to the guidelines i wrote for the
pymolwiki, how to make a good wiki page.
http://pymolwiki.org/index.php/Git_script_guidelines

My problem is that the figures still look a little "wrong", so they
are not yet good example figures yet. :-)
(Looking into my input...)

What I would really like, is to add these wiki scripts to a folder:
So one could just call in relax

import wiki.matplotlib_dpl94_r1rho_r2eff

wiki.matplotlib_dpl94_r1rho_r2eff.plot(res_folder = "resultsR1",
spin_inte = ":52@N", num_points=100, extend=5000.0 )
( I would have to make the script into a function :-) )

What I hope for, is a kind of development, where users can write wiki
scripts, a little like pymol,
which can help setup an analysis.

That could for example be functions that do

- Given a text file with file positions to .ft2 files, then collect
the "apod_rmsd", by calling nmrPipe "showApod test.ft2"
- Given a text file with folder positions to varian procpar files,
collect offset, spinlock time etc.

Best
Troels



2014-03-17 14:20 GMT+01:00 Edward d'Auvergne <edward@xxxxxxxxxxxxx>:
> Hi Troels,
>
> Do you think it would be worth including those three plots you sent me
> into the wiki page?  Then the visitor to that page will see what the
> script is capable of.
>
> Regards,
>
> Edward
>
>
>
> On 17 March 2014 14:16, Troels E. Linnet
> <NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
> > Update of sr #3124 (project relax):
> >
> >                 Priority:              5 - Normal => 3 - Low
> >                   Status:             In Progress => Postponed
> >
> >     _______________________________________________________
> >
> > Follow-up Comment #42:
> >
> > This support request has been postponed.
> >
> > A python matplotlib making these figures has been posted at the wiki:
> > http://wiki.nmr-relax.com/Matplotlib_DPL94_R1rho_R2eff
> >
> > Including interpolation of points, it makes three figures:
> >
> > Plot 1: R1_rho as function of theta.
> > Plot 2: R1_rho_R2eff as function of w_eff
> > Plot 3: R1_rho as function of as function of disp_point, the Spin-lock 
> > field
> > strength
> >
> > Note, Plot 3 is the usual outcome from the user function:
> > relax_disp.plot_disp_curves
> >
> >     _______________________________________________________
> >
> > Reply to this item at:
> >
> >   <http://gna.org/support/?3124>
> >
> > _______________________________________________
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> >   http://gna.org/
> >
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