mail[bug #21814] PDB file format - failure to load the sheet information with the error "IndexError: string index out of range".


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by Edward d Auvergne on March 18, 2014 - 20:02:
Follow-up Comment #2, bug #21814 (project relax):

This problem is due to a PDB record violation created by the MODELLER
software.  According to the PDB definition, every PDB line/record must be 80
characters.  All files downloaded from the PDB will have all records padded to
80 characters with whitespace.  For many records in the attached file, this is
not the case.

It should be easy for relax to handle the MODELLER corruption.  Each record
can simply be padded to 80 characters with spaces - as a PDB file should be -
prior to trying to extract the information from the record.

    _______________________________________________________

Reply to this item at:

  <http://gna.org/bugs/?21814>

_______________________________________________
  Message sent via/by Gna!
  http://gna.org/




Related Messages


Powered by MHonArc, Updated Wed Mar 19 14:00:13 2014