Re: [bug #21814] PDB file format - failure to load the sheet information with the error "IndexError: string index out of range". -- March 19, 2014 - 13:41

Hi Edward,

understood, I did not know.

Thanks!

Stefano

On Mar 18, 2014, at 8:02 PM, Edward d Auvergne wrote:

> Follow-up Comment #2, bug #21814 (project relax):
>
> This problem is due to a PDB record violation created by the MODELLER
> software.  According to the PDB definition, every PDB line/record must be 80
> characters.  All files downloaded from the PDB will have all records padded 
> to
> 80 characters with whitespace.  For many records in the attached file, this 
> is
> not the case.
>
> It should be easy for relax to handle the MODELLER corruption.  Each record
> can simply be padded to 80 characters with spaces - as a PDB file should be 
> -
> prior to trying to extract the information from the record.
>
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