Dear All,
I am using Relax ( version relax-1.3.5.GNU-Linux) to get relaxation curves
from HSQC spectra. I have exported the data from analysis in Sparky
format. After running for a few seconds i get he following error message
'List Index out of Range'.
Below is a print screen of the problem:
relax> spectrum.replicated(spectrum_ids=['T11000done', 'T110002done'])
relax> spectrum.replicated(spectrum_ids=['T11200done', 'T112002done'])
relax> spectrum.error_analysis()
Intensity measure: Peak heights.
Replicated spectra: Yes.
All spectra replicated: Yes.
Replicated spectra: ['T1010done', 'T10102done']
Standard deviation: 77677.6124466
Replicated spectra: ['T1020done', 'T10202done']
Standard deviation: 81714.9935075
Replicated spectra: ['T1030done', 'T10302done']
Standard deviation: 52174.0074096
Replicated spectra: ['T1050done', 'T10502done']
Standard deviation: 101149.864468
Replicated spectra: ['T1070done', 'T10702done']
Standard deviation: 59278.6902247
Replicated spectra: ['T1100done', 'T11002done']
Standard deviation: 41827.710636
Replicated spectra: ['T1150done', 'T11502done']
Standard deviation: 70130.6742832
Replicated spectra: ['T1200done', 'T12002done']
Standard deviation: 80696.9386138
Replicated spectra: ['T1300done', 'T13002done']
Standard deviation: 75574.7377343
Replicated spectra: ['T1400done', 'T14002done']
Standard deviation: 109708.032792
Replicated spectra: ['T1600done', 'T16002done']
Standard deviation: 96472.7940924
Replicated spectra: ['T1800done', 'T18002done']
Standard deviation: 78680.8879662
Replicated spectra: ['T11000done', 'T110002done']
Standard deviation: 263613.329907
Replicated spectra: ['T11200done', 'T112002done']
Traceback (most recent call last):
File "/home/ms4225/programs/relax-1.3.5/relax", line 358, in <module>
Relax()
File "/home/ms4225/programs/relax-1.3.5/relax", line 126, in __init__
self.interpreter.run(self.script_file)
File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
287, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script,
raise_relax_error=self.__raise_relax_error)
File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
533, in run_script
return console.interact(intro, local, script_file, quit,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
429, in interact_script
execfile(script_file, local)
File "R1_newLM.py", line 125, in <module>
spectrum.error_analysis()
File "/home/ms4225/programs/relax-1.3.5/prompt/spectrum.py", line 221,
in error_analysis
spectrum.error_analysis()
File "/home/ms4225/programs/relax-1.3.5/generic_fns/spectrum.py", line
394, in error_analysis
__errors_repl()
File "/home/ms4225/programs/relax-1.3.5/generic_fns/spectrum.py", line
189, in __errors_repl
ave_intensity = ave_intensity + spin.intensities[indices[j]]
IndexError: list index out of range
Could anyone point me in the direction of finding this error, as it the
message seems a bit ambiguous?
Many Thanks
Leanne
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List Index out of Range