Re: List Index out of Range -- December 03, 2010 - 11:15

Dear Leanne,

Welcome to the relax mailing lists.  The error you have found seems to
be from a new bug in relax.  I don't think anyone has encountered this
one before.  It would be very much appreciated if you could report
this within the relax bug tracker
(https://gna.org/bugs/?func=additem&group=relax).  This would allow
others who encounter the same problem to find out what is happening.
And it will also help me in debugging the issue, as input files, test
data, etc. can be attached to the bug report.  If you could come up
with a minimal set of test data (truncated, and randomised if you wish
to hide the data) along with a script that reproduces the bug, I
should be able to have a fix within a few minutes.  With the current
information you sent, it is very, very difficult for me to pinpoint
the location of the problem.

Cheers,

Edward



On 1 December 2010 15:54, L Minall <lm7902@xxxxxxxxxxxxx> wrote:
> Dear All,
>
> I am using Relax ( version relax-1.3.5.GNU-Linux) to get relaxation curves
> from HSQC spectra. I have exported the data from analysis in Sparky
> format. After running for a few seconds i get he following error message
> 'List Index out of Range'.
>
> Below is a print screen of the problem:
>
>
> relax> spectrum.replicated(spectrum_ids=['T11000done', 'T110002done'])
>
> relax> spectrum.replicated(spectrum_ids=['T11200done', 'T112002done'])
>
> relax> spectrum.error_analysis()
> Intensity measure:  Peak heights.
> Replicated spectra:  Yes.
> All spectra replicated:  Yes.
>
> Replicated spectra:  ['T1010done', 'T10102done']
> Standard deviation:  77677.6124466
>
> Replicated spectra:  ['T1020done', 'T10202done']
> Standard deviation:  81714.9935075
>
> Replicated spectra:  ['T1030done', 'T10302done']
> Standard deviation:  52174.0074096
>
> Replicated spectra:  ['T1050done', 'T10502done']
> Standard deviation:  101149.864468
>
> Replicated spectra:  ['T1070done', 'T10702done']
> Standard deviation:  59278.6902247
>
> Replicated spectra:  ['T1100done', 'T11002done']
> Standard deviation:  41827.710636
>
> Replicated spectra:  ['T1150done', 'T11502done']
> Standard deviation:  70130.6742832
>
> Replicated spectra:  ['T1200done', 'T12002done']
> Standard deviation:  80696.9386138
>
> Replicated spectra:  ['T1300done', 'T13002done']
> Standard deviation:  75574.7377343
>
> Replicated spectra:  ['T1400done', 'T14002done']
> Standard deviation:  109708.032792
>
> Replicated spectra:  ['T1600done', 'T16002done']
> Standard deviation:  96472.7940924
>
> Replicated spectra:  ['T1800done', 'T18002done']
> Standard deviation:  78680.8879662
>
> Replicated spectra:  ['T11000done', 'T110002done']
> Standard deviation:  263613.329907
>
> Replicated spectra:  ['T11200done', 'T112002done']
> Traceback (most recent call last):
>  File "/home/ms4225/programs/relax-1.3.5/relax", line 358, in <module>
>    Relax()
>  File "/home/ms4225/programs/relax-1.3.5/relax", line 126, in __init__
>    self.interpreter.run(self.script_file)
>  File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
> 287, in run
>    return run_script(intro=self.__intro_string, local=locals(),
> script_file=script_file, quit=self.__quit_flag,
> show_script=self.__show_script,
> raise_relax_error=self.__raise_relax_error)
>  File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
> 533, in run_script
>    return console.interact(intro, local, script_file, quit,
> show_script=show_script, raise_relax_error=raise_relax_error)
>  File "/home/ms4225/programs/relax-1.3.5/prompt/interpreter.py", line
> 429, in interact_script
>    execfile(script_file, local)
>  File "R1_newLM.py", line 125, in <module>
>    spectrum.error_analysis()
>  File "/home/ms4225/programs/relax-1.3.5/prompt/spectrum.py", line 221,
> in error_analysis
>    spectrum.error_analysis()
>  File "/home/ms4225/programs/relax-1.3.5/generic_fns/spectrum.py", line
> 394, in error_analysis
>    __errors_repl()
>  File "/home/ms4225/programs/relax-1.3.5/generic_fns/spectrum.py", line
> 189, in __errors_repl
>    ave_intensity = ave_intensity + spin.intensities[indices[j]]
> IndexError: list index out of range
>
> Could anyone point me in the direction of finding this error, as it the
> message seems a bit ambiguous?
>
> Many Thanks
>
> Leanne
>
>
>
>
> --
>
>
> --
>
>
>
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