Re: problems with final_data_extraction.py -- May 27, 2011 - 03:53

Hi again

I just found the directory of you execution. it seems as you wanted to 
extract local tm data. You will also have to deactivate diffusion tensor 
code, as the local tm model has no diffusion tensor.

Cheers
Michael


Am 24.05.2011 02:23, schrieb Deshmukh, Lalit (NIH/NIDDK) [F]:
> Hi,
>
> I am having some trouble with final_data_extraction.py script.  Here is the 
> error.
> ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> relax>  results.read(file='results', dir=None)
> Opening the file 'results.bz2' for reading.
> Traceback (most recent call last):
>    File "/usr/local/bin/relax", line 381, in<module>
>      Relax()
>    File "/usr/local/bin/relax", line 117, in __init__
>      self.interpreter.run(self.script_file)
>    File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 294, in run
>      return run_script(intro=self.__intro_string, local=locals(), 
> script_file=script_file, quit=self.__quit_flag, 
> show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
>    File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 597, in 
> run_script
>      return console.interact(intro, local, script_file, quit, 
> show_script=show_script, raise_relax_error=raise_relax_error)
>    File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 483, in 
> interact_script
>      exec_script(script_file, local)
>    File "/usr/local/relax-1.3.10/prompt/interpreter.py", line 376, in 
> exec_script
>      runpy.run_module(module, globals)
>    File "/usr/lib/python2.6/runpy.py", line 140, in run_module
>      fname, loader, pkg_name)
>    File "/usr/lib/python2.6/runpy.py", line 34, in _run_code
>      exec code in run_globals
>    File 
> "/u/deshmukhl/Capsid/T1T1p_NOE/Relax/Calc/local_tm/aic/final_data_extraction.py", 
> line 36, in<module>
>      spin_no = spin_id[spin_id.index(':')+1:spin_id.index('&')]
> ValueError: substring not found
> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>
> Thanks in advance,
>
> Regards,
> Lalit
>
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