On 8 August 2012 21:11, Venkat V <
venkat@xxxxxxxxxxxxxxxxxxx> wrote:
> Hi ,
>
> Here is how wx-python was installed.
>
> ./configure --prefix=/programs/x86_64-linux/wxpython/
2.8.12.1
> --enable-unicode --with-gtk --with-gnomeprint --with-opengl
> --with-libjpeg=builtin --with-libpng=builtin --with-libtiff=builtin
> --with-zlib=builtin --enable-optimize --enable-debug_flag
> --enable-rpath=/programs/x86_64-linux/wxpython/
2.8.12.1/lib
> make && make install
> cd contrib
> make && make install
> cd ../wxPython
> export PATH=programs/system/x86_64-linux/wxpython/
2.8.12.1/bin:$PATH
> python setup.py install
>
>
> Output of relax --info
>
> relax --info
>
>
>
> relax 2.1.0
>
> Molecular dynamics by NMR data analysis
>
> Copyright (C) 2001-2006 Edward d'Auvergne
> Copyright (C) 2006-2012 the relax development team
>
> This is free software which you are welcome to modify and redistribute under
> the conditions of the
> GNU General Public License (GPL). This program, including all modules, is
> licensed under the GPL
> and comes with absolutely no warranty. For details type 'GPL' within the
> relax prompt.
>
> Assistance in using the relax prompt and scripting interface can be accessed
> by typing 'help' within
> the prompt.
>
> Processor fabric: Uni-processor.
>
>
> Hardware information:
> Machine: x86_64
> Processor: x86_64
> Endianness: little
> Total RAM size: 2011 Mb
> Total swap size: 509 Mb
>
> Operating system information:
> System: Linux
> Release: 2.6.18-194.17.1.el5
> Version: #1 SMP Wed Sep 29 12:50:31 EDT 2010
> GNU/Linux version: CentOS 5.8 Final
> Distribution: redhat 5.8 Final
> Full platform string:
> Linux-2.6.18-194.17.1.el5-x86_64-with-redhat-5.8-Final
>
> Python information:
> Architecture: 64bit ELF
> Python version: 2.7.2
> Python branch:
> Python build: default, Oct 27 2011 16:10:58
> Python compiler: GCC 4.1.2 20080704 (Red Hat 4.1.2-51)
> Libc version: glibc 2.2.5
> Python implementation: CPython
> Python revision:
> Python executable: /programs/x86_64-linux/python/2.7.2/bin/python
> Python flags: sys.flags(debug=0, py3k_warning=0,
> division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0,
> dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0,
> tabcheck=0, verbose=0, unicode=0, bytes_warning=0)
> Python float info: sys.float_info(max=1.7976931348623157e+308,
> max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
> min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16,
> radix=2, rounds=1)
> Python module path: ['/programs/x86_64-linux/relax/2.1.0',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/pip-1.0.2-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/matplotlib-1.1.0-py2.7-linux-x86_64.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/yolk-0.4.1-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MySQL_python-1.2.3-py2.7-linux-x86_64.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/VTK-5.6.1-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysis-0.7.5.1-py2.7-linux-x86_64.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/GridDataFormats-0.2.2-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/networkx-1.6-py2.7.egg',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysisTests-0.7.5.1-py2.7.egg',
> '/programs/x86_64-linux/ccp4/6.2.0/ccp4-6.2.0/share/python',
> '/programs/x86_64-linux/ccpnmr/2.2.1/ccpnmr2.2/python',
> '/programs/x86_64-linux/csrosetta/20120626/python',
> '/programs/x86_64-linux/eman/1.9/lib',
> '/programs/x86_64-linux/eman2/20120806/lib',
> '/programs/x86_64-linux/eman2/20120806/bin',
> '/programs/x86_64-linux/haddock/2.1',
> '/programs/x86_64-linux/python/2.7.2/lib/python27.zip',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/plat-linux2',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-tk',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-old',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/PIL',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages',
> '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode',
> '/programs/x86_64-linux/relax/2.1.0/extern/scientific_python/linux2']
>
> Python packages and modules (most are optional):
>
> Name Installed Version Path
> minfx True Unknown
> /programs/x86_64-linux/relax/2.1.0/minfx
> bmrblib True Unknown
> /programs/x86_64-linux/relax/2.1.0/bmrblib
> numpy True 1.6.1
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/numpy
> scipy True 0.10.0
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/scipy
> wxPython True 2.8.12.1 (gtk2-unicode)
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx
> mpi4py False
> epydoc False
> optparse True 1.5.3
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/optparse.pyc
> readline True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/readline.so
> profile True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/profile.pyc
> bz2 True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/bz2.so
> gzip True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/gzip.pyc
> os.devnull True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/os.pyc
> xml True 0.8.4 (internal)
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/__init__.pyc
> xml.dom.minidom True
> /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/dom/minidom.pyc
>
> relax information:
> Version: 2.1.0
> Processor fabric: Uni-processor.
>
> relax C modules:
>
> Module Compiled File type
> Path
> maths_fns.relax_fit True ELF 64-bit LSB shared object, AMD x86-64,
> version 1 (SYSV), not stripped
> /programs/x86_64-linux/relax/2.1.0/maths_fns/relax_fit.so
>
>
> Will get the wx_python o/p by tomorrow
>
> venkat
>
> On Wed, Aug 8, 2012 at 5:09 PM, Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
> wrote:
>>
>> Hi Venkat,
>>
>> I have seen the log file attached to your bug report
>> (
https://gna.org/bugs/?19987). There seems to be two separate issues
>> here. The first is the two failures in the system tests. As you can
>> probably see, this is for Art Palmer's Modelfree4 program. >From the
>> lower precision of the chi-squared values from your installed version,
>> I would assume that you have a version much older than the current
>> (though still very old) 4.20 version which includes a number of
>> patches I sent to Art to fix bugs and to compile with GCC
>> (
http://biochemistry.hs.columbia.edu/labs/palmer/software/modelfree.html).
>> You can ignore these two failures.
>>
>> The second problem is in the GUI tests. I think these messages
>> clearly identify the problem. The important error message is the very
>> first:
>>
>> Traceback (most recent call last):
>> File
>> "/programs/x86_64-linux/relax/2.1.0/test_suite/gui_tests/base_classes.py",
>> line 198, in setUp
>> self.app.gui = Main(parent=None, id=-1, title="")
>> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line
>> 162, in __init__
>> self.add_start_screen()
>> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line
>> 259, in add_start_screen
>> image = wx.StaticBitmap(self, -1,
>> bitmap_setup(paths.IMAGE_PATH+'ulysses_shadowless_400x168.png'))
>> File "/programs/x86_64-linux/relax/2.1.0/gui/misc.py", line 133, in
>> bitmap_setup
>> bitmap.SetMaskColour(None)
>> File
>> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_gdi.py",
>> line 632, in SetMaskColour
>> return _gdi_.Bitmap_SetMaskColour(*args, **kwargs)
>> PyAssertionError: C++ assertion "Ok()" failed at
>> ./src/gtk/colour.cpp(146) in Blue(): invalid colour
>>
>> The second is just an error caused by the failure of the first test -
>> nothing to worry about. You can then see that these two error
>> messages are alternatively repeated for all the GUI tests. The key is
>> the failure of the setting of the mask
>> (
http://en.wikipedia.org/wiki/Mask_%28computing%29#Image_masks) for
>> the bitmap image. This clearly indicates that your wxPython install
>> is broken (for your sys admin - I'm guessing because of the linking to
>> the GTK+ libraries). You might be able to test this with the wxPython
>> demos for this wxPython version. Try the following and see if you
>> observe error messages:
>>
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py GenericButtons.py
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py StaticBitmap.py
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py ComboCtrl.py
>>
>> These should all run fine. Note you need to be in the wx_demo
>> directory containing the run.py and other files. Could you copy and
>> paste the output of these tests. Also, I just noticed that your
>> information from:
>>
>> $ relax --info
>>
>> was accidentally not sent to the mailing lists. Could you copy and
>> paste that output as well for reference. Remember to click on
>> 'reply-to-all' rather than just 'reply' when responding. Other
>> information that would be useful is how is this wxPython installed?
>> Is it installed from the package management system, is it downloaded
>> binaries, or is it self compiled? Is it also installed locally or on
>> an NFS share, for example?
>>
>> Cheers,
>>
>> Edward
>>
>>
>> P.S. To summarize, here is a check list of needed information:
>>
>> 1. wx_demo tests output.
>> 2. relax --info output.
>> 3. wxPython install info.
>>
>>
>>
>> On 8 August 2012 13:07, venkataraman <
venkat@xxxxxxxxxxxxxxxxxxx> wrote:
>> > I had sent the error report as a text file for the o/p of
>> > relax --test-suite on x86_64-linux on centOS5.
>> >
>> >
>> >
>> > _______________________________________________
>> > relax (
http://www.nmr-relax.com)
>> >
>> > This is the relax-users mailing list
>> >
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>> >
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>> > reminder, or change your subscription options,
>> > visit the list information page at
>> >
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>
>
Re: relax GUI