Hi,
This is the first time I use NMR relax for model-free analysis (so apologise
in advance if the answer to my question is trivial). I am using relax 3.1.5
on Windows 8.
Basically I have some R1, R2 and NOE data (that I have fitted elsewhere) and
a pdb file. Using the spin editor I have loaded N, C, H from the pdb file.
I have also added three relaxation data lists for my R1, R2 and NOE data.
The relaxation data were saved as .txt files. The format of the data is as
follows "residue no., residue type, R1/R2/NOE, spin type":
2 ALA 5.49631746729691 N
3 ASP 3.74279511939516 N
4 ASP 6.12594952217594 N
6 SER 6.75812664729337 N
I then press execute. The programme successfully read the sequence and my
R1/R2/NOE data. However, then I receive the following error message
Traceback (most recent call last):
File "C:\Users\ivanhoe.leung\Desktop\relax-
3.1.5\gui\analyses\auto_model_free.py", line 588, in execute
data, missing = self.assemble_data()
File "C:\Users\ivanhoe.leung\Desktop\relax-
3.1.5\gui\analyses\auto_model_free.py", line 416, in assemble_data
if spin.isotope in ['15N', '13C'] and (not hasattr(spin, 'csa') or
spin.csa == None):
AttributeError: 'SpinContainer' object has no attribute 'isotope'
It would be appreciated if you can shed some light into my question -
whether I missed some obvious steps or if my data format is not correct.
Thanks
Ivan Leung
MChem, DPhil (Oxf)
Postdoctoral research assistant
Department of Chemistry
University of Oxford