Hi Lisa,
Welcome to the relax mailing lists! I think Jack might be able to
answer this better, as he appears to be in charge of these packages at
MacPorts:
https://www.macports.org/ports.php?by=name&substr=relax
https://www.macports.org/ports.php?by=name&substr=pymol
https://www.macports.org/ports.php?by=name&substr=CCPN
When you installed relax for the first time from MacPorts, was there
any other software installed at around the same time? Especially
non-MacPorts libraries. For installing relax the second time, did you
use the DMG file at http://www.nmr-relax.com/download.html#Mac_OS_X ?
If so, this is fully independent and shouldn't touch any parts of the
system - all dependencies are built into it. The problems you see
cannot be due to relax itself, but maybe you could try uninstalling
the MacPorts versions of relax, PyMOL, CCPN and importantly all their
dependencies (py27-numpy py27-scipy py27-wxpython-3.0 pymol python27
scons for relax) and then try to reinstall PyMOL and CCPN. Maybe it
is the dependencies that are the issue. Maybe py27-wxpython-3.0
clashes with py27-tkinter, though that is extremely unlikely. If it
is a tk problem, which I have seen before, then the entire PyMOL tk
window will refuse to start and you'll only have the OpenGL window and
an error message about the tk problem. It is a very strange problem,
and maybe Jack has better insight as to what is happening.
Regards,
Edward
On 19 March 2015 at 17:44, Lisa Warner <lisa.warner@xxxxxxxxx> wrote:
Hi All,
I'm not sure if this is a forum topic or not. Recently all of the menu
graphics for pymol and ccpn analysis stopped working shortly after I
installed Relax, which is why I'm posting this. Initially, I installed the
Macports version of Relax, but then noticed that it wasn't as up-to-date as
the current distribution on the Stand-Alone distribution on the Relax
website, so I installed that. It was a short time after that I noticed that
pymol/analysis menus were not working anymore. The problem could be
anything at this point, maybe not Relax related at all. I'm just trying to
figure things out. I think this is a tk-related issue. (I have already
tried to reinstall with the -no_tkinter suggestion).
My question is this:
Do the python packages that go with the stand-alone Relax get put into or
overwrite the system files? /usr/bin/?
Even if they do, it shouldn't matter because all of my dependencies for
Pymol/CCPN should be sourcing the macports install dir /opt/local/bin...
I've uninstalled all Relax and all softwares installed with Macports and
reinstalled only pymol and it's dependencies to try to tease out the
problem. But even after removing everything and a fresh install of Pymol, I
still have the same problem.
I realize this may not even be a problem from Relax, but if you have any
advice, I'd greatly appreciate it.
Thanks --
Lisa
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Re: Issue with Pymol/CCPN menus after Relax install