Class Hierarchy

prompt.angles.Angles
generic_fns.angles.Angles
dx.base_map.Base_Map
- dx.isosurface_3D.Iso3D
specific_fns.base_class.Common_functions
- specific_fns.jw_mapping.Jw_mapping
- specific_fns.model_free.Model_free
minimise.base_classes.Conjugate_gradient
- minimise.fletcher_reeves_cg.Fletcher_reeves
- minimise.hestenes_stiefel_cg.Hestenes_stiefel
- minimise.polak_ribiere_cg.Polak_ribiere
- minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
minimise.constraint_linear.Constraint_linear
generic_fns.dasha.Dasha
prompt.dasha.Dasha
data.Data
maths_fns.jw_mapping.Data
maths_fns.mf.Data
generic_fns.diffusion_tensor.Diffusion_tensor
prompt.diffusion_tensor.Diffusion_tensor
data.Element
- thread_classes.ThreadData
generic_fns.eliminate.Eliminate
prompt.eliminate.Eliminate
generic_fns.fix.Fix
prompt.fix.Fix
prompt.gpl.GPL
generic_fns.main.Generic
generic_fns.grace.Grace
prompt.grace.Grace
minimise.base_classes.Hessian_mods
- minimise.dogleg.Dogleg
- minimise.exact_trust_region.Exact_trust_region
- minimise.newton.Newton
io.IO
prompt.init_data.Init_data
generic_fns.intensity.Intensity
prompt.interpreter.Interpreter
prompt.jw_mapping.Jw_mapping
prompt.command.Lh
minimise.base_classes.Line_search
- minimise.bfgs.Bfgs
  - minimise.dogleg.Dogleg
  - minimise.exact_trust_region.Exact_trust_region
- minimise.coordinate_descent.Coordinate_descent
- minimise.fletcher_reeves_cg.Fletcher_reeves
- minimise.hestenes_stiefel_cg.Hestenes_stiefel
- minimise.ncg.Ncg
- minimise.newton.Newton
- minimise.polak_ribiere_cg.Polak_ribiere
- minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
- minimise.steepest_descent.Steepest_descent
prompt.command.Ll
prompt.command.Ls
maths_fns.jw_mapping.Mapping
maths_fns.mf.Mf
minimise.base_classes.Min
- minimise.bfgs.Bfgs
  - minimise.dogleg.Dogleg
  - minimise.exact_trust_region.Exact_trust_region
- minimise.cauchy_point.Cauchy_point
- minimise.coordinate_descent.Coordinate_descent
- minimise.dogleg.Dogleg
- minimise.exact_trust_region.Exact_trust_region
- minimise.fletcher_reeves_cg.Fletcher_reeves
- minimise.hestenes_stiefel_cg.Hestenes_stiefel
- minimise.levenberg_marquardt.Levenberg_marquardt
- minimise.method_of_multipliers.Method_of_multipliers
- minimise.ncg.Ncg
- minimise.newton.Newton
- minimise.polak_ribiere_cg.Polak_ribiere
- minimise.polak_ribiere_plus_cg.Polak_ribiere_plus
- minimise.simplex.Simplex
- minimise.steepest_descent.Steepest_descent
- minimise.steihaug_cg.Steihaug
prompt.minimisation.Minimisation
generic_fns.minimise.Minimise
prompt.model_free.Model_free
generic_fns.model_selection.Model_selection
prompt.model_selection.Modsel
generic_fns.molmol.Molmol
prompt.molmol.Molmol
prompt.monte_carlo.Monte_carlo
generic_fns.monte_carlo.Monte_carlo
prompt.noe.Noe
specific_fns.noe.Noe
prompt.nuclei.Nuclei
generic_fns.nuclei.Nuclei
dx.opendx.OpenDX
prompt.dx.OpenDX
optparse.OptionContainer: Abstract base class.
prompt.pdb.PDB
generic_fns.pdb.PDB
package.Package (script)
generic_fns.palmer.Palmer
prompt.palmer.Palmer
popen2.Popen3: Class representing a child process.
- processes.RelaxPopen3
relax.Relax (script)
errors.RelaxErrors
thread_classes.RelaxParentThread
- thread_classes.RelaxHostParentThread
- generic_fns.minimise.RelaxMinParentThread
prompt.relax_data.Relax_data
specific_fns.relax_fit.Relax_fit
prompt.relax_fit.Relax_fit
generic_fns.results.Results
prompt.results.Results
prompt.run.Run
generic_fns.runs.Runs
specific_fns.relax_data.Rx_data
prompt.select.Select
generic_fns.selection.Selection
generic_fns.sequence.Sequence
prompt.sequence.Sequence
specific_fns.main.Specific
specific_fns.specific_setup.Specific_setup
io.SplitIO
generic_fns.state.State
prompt.state.State
prompt.tab_completion.Tab_completion
prompt.thread.Threading
thread_classes.Threading
minimise.base_classes.Trust_region
- minimise.cauchy_point.Cauchy_point
- minimise.dogleg.Dogleg
- minimise.exact_trust_region.Exact_trust_region
- minimise.steihaug_cg.Steihaug
prompt.unselect.Unselect
prompt.value.Value
generic_fns.value.Value
prompt.view.View
generic_fns.vmd.Vmd
prompt.vmd.Vmd
prompt.interpreter._Exit
prompt.help._Helper
prompt.help._Helper_python
object: The most base type
- exceptions.BaseException: Common base class for all exceptions
  - exceptions.Exception: Common base class for all non-exit exceptions.
    - errors.RelaxErrors.BaseError
- threading._Verbose
  - threading.Thread
- dict: dict() -> new empty dictionary.
  - data.Residue
  - data.SpecificData
- list: list() -> new list list(sequence) -> new list initialized from sequence's items
  - data.ResidueList