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]
A
add()
(in
Sequence
)
all()
(in
Select
)
are_mf_params_set()
(in
Model_free
)
add()
(in
Sequence
)
all()
(in
Unselect
)
arguments()
(in
Relax
)
add_item()
(in
ResidueList
)
angles
(in
generic_fns
)
assemble_param_names()
(in
Model_free
)
add_item()
(in
SpecificData
)
Angles
(in
generic_fns.angles
)
assemble_param_vector()
(in
Model_free
)
add_list()
(in
Residue
)
angles
(in
prompt
)
assemble_scaling_matrix()
(in
Model_free
)
add_residue()
(in
Rx_data
)
Angles
(in
prompt.angles
)
assign_function()
(in
Noe
)
aic()
(in
Model_selection
)
angles()
(in
Angles
)
aicc()
(in
Model_selection
)
angles()
(in
Angles
)
B
back_calc()
(in
Relax_data
)
backtrack()
(in
minimise.line_search.backtrack
)
BaseError
(in
RelaxErrors
)
back_calc()
(in
Model_free
)
base_class
(in
specific_fns
)
bfgs
(in
minimise
)
back_calc()
(in
Rx_data
)
base_classes
(in
minimise
)
Bfgs
(in
minimise.bfgs
)
backline()
(in
Line_search
)
base_map
(in
dx
)
bfgs()
(in
minimise.bfgs
)
backtrack
(in
minimise.line_search
)
Base_Map
(in
dx.base_map
)
bic()
(in
Model_selection
)
C
calc()
(in
Minimise
)
calc_ellipsoid_S2_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_spheroid_di()
(in
maths_fns.direction_cosine
)
calc()
(in
Minimisation
)
calc_ellipsoid_S2_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
calc_spheroid_dti()
(in
maths_fns.correlation_time
)
calc_bk()
(in
Fletcher_reeves
)
calc_ellipsoid_S2_djw_dDj()
(in
maths_fns.jw_mf
)
calc_spheroid_ti()
(in
maths_fns.correlation_time
)
calc_bk()
(in
Hestenes_stiefel
)
calc_ellipsoid_S2_te_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calculate()
(in
Jw_mapping
)
calc_bk()
(in
Polak_ribiere
)
calc_ellipsoid_S2_te_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calculate()
(in
Model_free
)
calc_bk()
(in
Polak_ribiere_plus
)
calc_ellipsoid_S2_te_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
calculate()
(in
Noe
)
calc_d2noe()
(in
maths_fns.ri
)
calc_ellipsoid_S2_te_d2jw_dDjdte()
(in
maths_fns.jw_mf
)
cauchy_point
(in
minimise
)
calc_d2r1()
(in
maths_fns.ri
)
calc_ellipsoid_S2_te_djw_dDj()
(in
maths_fns.jw_mf
)
Cauchy_point
(in
minimise.cauchy_point
)
calc_diff_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
cauchy_point()
(in
minimise.cauchy_point
)
calc_diff_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
check_manual_version()
(in
Package
)
calc_diff_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2_ts_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
check_svn()
(in
Package
)
calc_diff_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_ellipsoid_S2f_S2_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
check_version()
(in
Package
)
calc_diff_djw_dDj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2_ts_d2jw_dDjdts()
(in
maths_fns.jw_mf
)
chi2
(in
maths_fns
)
calc_diff_djw_dOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2_ts_djw_dDj()
(in
maths_fns.jw_mf
)
chi2()
(in
maths_fns.chi2
)
calc_diff_S2_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
cholesky
(in
minimise.hessian_mods
)
calc_diff_S2_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
cholesky()
(in
Hessian_mods
)
calc_diff_S2_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
cholesky()
(in
minimise.hessian_mods.cholesky
)
calc_diff_S2_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_d2jw_dDjdS2s()
(in
maths_fns.jw_mf
)
clear_history()
(in
Molmol
)
calc_diff_S2_d2jw_dOjdS2()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_d2jw_dDjdts()
(in
maths_fns.jw_mf
)
clear_history()
(in
Molmol
)
calc_diff_S2_djw_dDj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_S2s_ts_djw_dDj()
(in
maths_fns.jw_mf
)
close_all_pipes()
(in
RelaxThread
)
calc_diff_S2_djw_dOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
command
(in
prompt
)
calc_diff_S2_te_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
command()
(in
Molmol
)
calc_diff_S2_te_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
Common_functions
(in
specific_fns.base_class
)
calc_diff_S2_te_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2_ts_d2jw_dDjdtf()
(in
maths_fns.jw_mf
)
comp_csa_const_func()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_d2jw_dDjdte()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2_ts_djw_dDj()
(in
maths_fns.jw_mf
)
comp_csa_const_grad()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
comp_csa_const_hess()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_d2jw_dOjdS2()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
comp_dip_const_func()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_d2jw_dOjdte()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
comp_dip_const_grad()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_ellipsoid_S2f_tf_S2s_ts_d2jw_dDjdtf()
(in
maths_fns.jw_mf
)
comp_dip_const_hess()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_djw_dDj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_S2f_tf_S2s_ts_djw_dDj()
(in
maths_fns.jw_mf
)
comp_r1_csa_const()
(in
maths_fns.ri_comps
)
calc_diff_S2_te_djw_dOj()
(in
maths_fns.jw_mf
)
calc_ellipsoid_ti()
(in
maths_fns.correlation_time
)
comp_r1_csa_jw()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_fixed_csa()
(in
maths_fns.ri_comps
)
comp_r1_dip_jw()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_fixed_dip()
(in
maths_fns.ri_comps
)
comp_r2_csa_const()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dDjdS2()
(in
maths_fns.jw_mf
)
calc_jw()
(in
maths_fns.jw_mf
)
comp_r2_csa_jw()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
calc_noe()
(in
maths_fns.ri
)
comp_r2_dip_const()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dDjdts()
(in
maths_fns.jw_mf
)
calc_r1()
(in
maths_fns.ri
)
comp_r2_dip_jw()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_ri()
(in
Mf
)
comp_rex_const_func()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dOjdS2()
(in
maths_fns.jw_mf
)
calc_S2_djw_dS2()
(in
maths_fns.jw_mf
)
comp_rex_const_grad()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dOjdS2f()
(in
maths_fns.jw_mf
)
calc_S2_jw()
(in
maths_fns.jw_mf
)
comp_sigma_noe_dip_jw()
(in
maths_fns.ri_comps
)
calc_diff_S2f_S2_ts_d2jw_dOjdts()
(in
maths_fns.jw_mf
)
calc_S2_te_d2jw_dS2dte()
(in
maths_fns.jw_mf
)
config_text()
(in
Iso3D
)
calc_diff_S2f_S2_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_S2_te_d2jw_dte2()
(in
maths_fns.jw_mf
)
Conjugate_gradient
(in
minimise.base_classes
)
calc_diff_S2f_S2_ts_djw_dDj()
(in
maths_fns.jw_mf
)
calc_S2_te_djw_comps()
(in
maths_fns.jw_mf_comps
)
constraint_linear
(in
minimise
)
calc_diff_S2f_S2_ts_djw_dOj()
(in
maths_fns.jw_mf
)
calc_S2_te_djw_dS2()
(in
maths_fns.jw_mf
)
Constraint_linear
(in
minimise.constraint_linear
)
calc_diff_S2f_S2s_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_S2_te_djw_dte()
(in
maths_fns.jw_mf
)
contract()
(in
Simplex
)
calc_diff_S2f_S2s_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_S2_te_jw()
(in
maths_fns.jw_mf
)
contract_orig()
(in
Simplex
)
calc_diff_S2f_S2s_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
calc_S2_te_jw_comps()
(in
maths_fns.jw_mf_comps
)
conv_test()
(in
Simplex
)
calc_diff_S2f_S2s_ts_d2jw_dDjdS2s()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_d2jw_dS2dts()
(in
maths_fns.jw_mf
)
coordinate_descent
(in
minimise
)
calc_diff_S2f_S2s_ts_d2jw_dDjdts()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_d2jw_dS2fdts()
(in
maths_fns.jw_mf
)
Coordinate_descent
(in
minimise.coordinate_descent
)
calc_diff_S2f_S2s_ts_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_d2jw_dts2()
(in
maths_fns.jw_mf
)
coordinate_descent()
(in
minimise.coordinate_descent
)
calc_diff_S2f_S2s_ts_d2jw_dOjdS2f()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
copy()
(in
Diffusion_tensor
)
calc_diff_S2f_S2s_ts_d2jw_dOjdts()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_djw_dS2()
(in
maths_fns.jw_mf
)
copy()
(in
Results
)
calc_diff_S2f_S2s_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_S2f_S2_ts_djw_dS2f()
(in
maths_fns.jw_mf
)
copy()
(in
Sequence
)
calc_diff_S2f_S2s_ts_djw_dDj()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_djw_dts()
(in
maths_fns.jw_mf
)
copy()
(in
Value
)
calc_diff_S2f_S2s_ts_djw_dOj()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_jw()
(in
maths_fns.jw_mf
)
copy()
(in
Diffusion_tensor
)
calc_diff_S2f_tf_S2_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_S2f_S2_ts_jw_comps()
(in
maths_fns.jw_mf_comps
)
copy()
(in
Model_free
)
calc_diff_S2f_tf_S2_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_d2jw_dS2fdS2s()
(in
maths_fns.jw_mf
)
copy()
(in
Relax_data
)
calc_diff_S2f_tf_S2_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_d2jw_dS2fdts()
(in
maths_fns.jw_mf
)
copy()
(in
Sequence
)
calc_diff_S2f_tf_S2_ts_d2jw_dDjdtf()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_d2jw_dS2sdts()
(in
maths_fns.jw_mf
)
copy()
(in
Value
)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_d2jw_dts2()
(in
maths_fns.jw_mf
)
copy()
(in
Model_free
)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdS2f()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
copy()
(in
Rx_data
)
calc_diff_S2f_tf_S2_ts_d2jw_dOjdtf()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_djw_dS2f()
(in
maths_fns.jw_mf
)
copy_save_file()
(in
RelaxThread
)
calc_diff_S2f_tf_S2_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_S2f_S2s_ts_djw_dts()
(in
maths_fns.jw_mf
)
correlation_time
(in
maths_fns
)
calc_diff_S2f_tf_S2_ts_djw_dDj()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_jw()
(in
maths_fns.jw_mf
)
create()
(in
Dasha
)
calc_diff_S2f_tf_S2_ts_djw_dOj()
(in
maths_fns.jw_mf
)
calc_S2f_S2s_ts_jw_comps()
(in
maths_fns.jw_mf_comps
)
create()
(in
Palmer
)
calc_diff_S2f_tf_S2s_ts_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_d2jw_dS2fdtf()
(in
maths_fns.jw_mf
)
create()
(in
Runs
)
calc_diff_S2f_tf_S2s_ts_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_d2jw_dtf2()
(in
maths_fns.jw_mf
)
create()
(in
Dasha
)
calc_diff_S2f_tf_S2s_ts_d2jw_dDjdS2f()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
create()
(in
Palmer
)
calc_diff_S2f_tf_S2s_ts_d2jw_dDjdtf()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_djw_dS2f()
(in
maths_fns.jw_mf
)
create()
(in
Run
)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdOk()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_djw_dtf()
(in
maths_fns.jw_mf
)
create_config()
(in
Base_Map
)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdS2f()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_jw()
(in
maths_fns.jw_mf
)
create_data()
(in
Monte_carlo
)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdS2s()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2_ts_jw_comps()
(in
maths_fns.jw_mf_comps
)
create_data()
(in
Monte_carlo
)
calc_diff_S2f_tf_S2s_ts_d2jw_dOjdtf()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2s_ts_d2jw_dS2fdtf()
(in
maths_fns.jw_mf
)
create_general()
(in
Base_Map
)
calc_diff_S2f_tf_S2s_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
calc_S2f_tf_S2s_ts_d2jw_dtf2()
(in
maths_fns.jw_mf
)
create_list()
(in
Tab_completion
)
calc_diff_S2f_tf_S2s_ts_djw_dDj()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2s_ts_djw_comps()
(in
maths_fns.jw_mf_comps
)
create_lm_matrix()
(in
Levenberg_marquardt
)
calc_diff_S2f_tf_S2s_ts_djw_dOj()
(in
maths_fns.jw_mf
)
calc_S2f_tf_S2s_ts_djw_dS2f()
(in
maths_fns.jw_mf
)
create_map()
(in
Base_Map
)
calc_dnoe()
(in
maths_fns.ri
)
calc_S2f_tf_S2s_ts_djw_dS2s()
(in
maths_fns.jw_mf
)
create_mc_data()
(in
Model_free
)
calc_dr1()
(in
maths_fns.ri
)
calc_S2f_tf_S2s_ts_djw_dtf()
(in
maths_fns.jw_mf
)
create_mfdata()
(in
Palmer
)
calc_ellipsoid_ci()
(in
maths_fns.weights
)
calc_S2f_tf_S2s_ts_jw()
(in
maths_fns.jw_mf
)
create_mfin()
(in
Palmer
)
calc_ellipsoid_d2ci()
(in
maths_fns.weights
)
calc_S2f_tf_S2s_ts_jw_comps()
(in
maths_fns.jw_mf_comps
)
create_mfmodel()
(in
Palmer
)
calc_ellipsoid_d2di()
(in
maths_fns.direction_cosine
)
calc_sigma_noe()
(in
Mapping
)
create_mfpar()
(in
Palmer
)
calc_ellipsoid_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_sphere_ci()
(in
maths_fns.weights
)
create_model()
(in
Model_free
)
calc_ellipsoid_d2jw_dDjdOj()
(in
maths_fns.jw_mf
)
calc_sphere_dti()
(in
maths_fns.correlation_time
)
create_model()
(in
Model_free
)
calc_ellipsoid_d2ti()
(in
maths_fns.correlation_time
)
calc_sphere_ti()
(in
maths_fns.correlation_time
)
create_point()
(in
Base_Map
)
calc_ellipsoid_dci()
(in
maths_fns.weights
)
calc_spheroid_ci()
(in
maths_fns.weights
)
create_program()
(in
Base_Map
)
calc_ellipsoid_ddi()
(in
maths_fns.direction_cosine
)
calc_spheroid_d2ci()
(in
maths_fns.weights
)
create_run()
(in
Palmer
)
calc_ellipsoid_di()
(in
maths_fns.direction_cosine
)
calc_spheroid_d2di()
(in
maths_fns.direction_cosine
)
create_script()
(in
Dasha
)
calc_ellipsoid_djw_dDj()
(in
maths_fns.jw_mf
)
calc_spheroid_d2ti()
(in
maths_fns.correlation_time
)
create_sublist()
(in
Tab_completion
)
calc_ellipsoid_dti()
(in
maths_fns.correlation_time
)
calc_spheroid_dci()
(in
maths_fns.weights
)
cubic_ext()
(in
minimise.line_search.interpolate
)
calc_ellipsoid_S2_d2jw_dDjdDk()
(in
maths_fns.jw_mf
)
calc_spheroid_ddi()
(in
maths_fns.direction_cosine
)
cubic_int()
(in
minimise.line_search.interpolate
)
D
d2chi2()
(in
maths_fns.chi2
)
default_value()
(in
Jw_mapping
)
display()
(in
Sequence
)
d2func_all()
(in
Mf
)
default_value()
(in
Model_free
)
display()
(in
Value
)
d2func_diff()
(in
Mf
)
delete()
(in
Diffusion_tensor
)
display()
(in
Diffusion_tensor
)
d2func_local_tm()
(in
Mf
)
delete()
(in
Runs
)
display()
(in
Relax_data
)
d2func_mf()
(in
Mf
)
delete()
(in
Sequence
)
display()
(in
Results
)
d2r1_comps()
(in
maths_fns.ri_comps
)
delete()
(in
IO
)
display()
(in
Sequence
)
d2ri_comps()
(in
maths_fns.ri_comps
)
delete()
(in
Diffusion_tensor
)
display()
(in
Value
)
d2ri_comps_csa()
(in
maths_fns.ri_comps
)
delete()
(in
Model_free
)
display()
(in
Rx_data
)
d2ri_comps_r()
(in
maths_fns.ri_comps
)
delete()
(in
Relax_data
)
doc
(in
Minimisation
)
d2ri_comps_r_csa()
(in
maths_fns.ri_comps
)
delete()
(in
Run
)
doc_string
(in
prompt
)
dasha
(in
generic_fns
)
delete()
(in
Sequence
)
dogleg
(in
minimise
)
Dasha
(in
generic_fns.dasha
)
delete()
(in
Model_free
)
Dogleg
(in
minimise.dogleg
)
dasha
(in
prompt
)
delete()
(in
Rx_data
)
dogleg()
(in
Dogleg
)
Dasha
(in
prompt.dasha
)
determine_graph_type()
(in
Grace
)
dogleg()
(in
minimise.dogleg
)
data
determine_param_set_type()
(in
Model_free
)
double_test()
(in
Min
)
Data
(in
data
)
dfunc()
(in
Constraint_linear
)
dr1_comps()
(in
maths_fns.ri_comps
)
Data
(in
maths_fns.jw_mapping
)
dfunc_all()
(in
Mf
)
dri_comps()
(in
maths_fns.ri_comps
)
Data
(in
maths_fns.mf
)
dfunc_diff()
(in
Mf
)
dri_comps_csa()
(in
maths_fns.ri_comps
)
data_init()
(in
Jw_mapping
)
dfunc_local_tm()
(in
Mf
)
dri_comps_csa_rex()
(in
maths_fns.ri_comps
)
data_init()
(in
Model_free
)
dfunc_mf()
(in
Mf
)
dri_comps_r()
(in
maths_fns.ri_comps
)
data_init()
(in
Rx_data
)
diffusion_tensor
(in
generic_fns
)
dri_comps_r_csa()
(in
maths_fns.ri_comps
)
data_names()
(in
Diffusion_tensor
)
Diffusion_tensor
(in
generic_fns.diffusion_tensor
)
dri_comps_r_csa_rex()
(in
maths_fns.ri_comps
)
data_names()
(in
Sequence
)
diffusion_tensor
(in
prompt
)
dri_comps_r_rex()
(in
maths_fns.ri_comps
)
data_names()
(in
Jw_mapping
)
Diffusion_tensor
(in
prompt.diffusion_tensor
)
dri_comps_rex()
(in
maths_fns.ri_comps
)
data_names()
(in
Model_free
)
direction_cosine
(in
maths_fns
)
duplicate_data()
(in
Model_free
)
data_names()
(in
Rx_data
)
disassemble_param_vector()
(in
Model_free
)
dx
dchi2()
(in
maths_fns.chi2
)
display()
(in
Diffusion_tensor
)
dx
(in
prompt
)
default_value()
(in
Diffusion_tensor
)
display()
(in
Results
)
E
eigenvalue
(in
minimise.hessian_mods
)
error()
(in
Noe
)
execute()
(in
Palmer
)
eigenvalue()
(in
Hessian_mods
)
error()
(in
RelaxParser
)
execute()
(in
Threading
)
eigenvalue()
(in
minimise.hessian_mods.eigenvalue
)
error_analysis()
(in
Monte_carlo
)
extend()
(in
Simplex
)
Element
(in
data
)
error_analysis()
(in
Monte_carlo
)
extract()
(in
Dasha
)
eliminate
(in
generic_fns
)
errors
extract()
(in
Palmer
)
Eliminate
(in
generic_fns.eliminate
)
exact_trust_region
(in
minimise
)
extract()
(in
Dasha
)
eliminate
(in
prompt
)
Exact_trust_region
(in
minimise.exact_trust_region
)
extract()
(in
Palmer
)
Eliminate
(in
prompt.eliminate
)
exact_trust_region()
(in
minimise.exact_trust_region
)
extract_d2r1()
(in
maths_fns.ri
)
eliminate()
(in
Eliminate
)
exec_phasetwo()
(in
minimise.hessian_mods.se99
)
extract_data()
(in
IO
)
eliminate()
(in
Eliminate
)
exec_relax()
(in
RelaxThread
)
extract_dr1()
(in
maths_fns.ri
)
eliminate()
(in
Model_free
)
execute()
(in
Dasha
)
extract_int_data()
(in
Intensity
)
eliminate_unused_runs()
(in
Runs
)
execute()
(in
Palmer
)
extract_r1()
(in
maths_fns.ri
)
ellipsoid()
(in
Diffusion_tensor
)
execute()
(in
Dasha
)
ellipsoid_frame()
(in
Angles
)
execute()
(in
OpenDX
)
F
file_path()
(in
IO
)
fletcher_reeves_cg
(in
minimise
)
func_diff()
(in
Mf
)
find_index()
(in
Rx_data
)
fold_angles()
(in
Diffusion_tensor
)
func_dLA()
(in
Method_of_multipliers
)
find_nucleus()
(in
Nuclei
)
func()
(in
Mapping
)
func_dri_dcsa_prime()
(in
maths_fns.ri_prime
)
finish()
(in
Tab_completion
)
func()
(in
Constraint_linear
)
func_dri_djw_prime()
(in
maths_fns.ri_prime
)
fix
(in
generic_fns
)
func_all()
(in
Mf
)
func_dri_dr_prime()
(in
maths_fns.ri_prime
)
Fix
(in
generic_fns.fix
)
func_d2LA()
(in
Method_of_multipliers
)
func_dri_drex_prime()
(in
maths_fns.ri_prime
)
fix
(in
prompt
)
func_d2LA_simple()
(in
Method_of_multipliers
)
func_LA()
(in
Method_of_multipliers
)
Fix
(in
prompt.fix
)
func_d2ri_dcsa2_prime()
(in
maths_fns.ri_prime
)
func_local_tm()
(in
Mf
)
fix()
(in
Fix
)
func_d2ri_djwdcsa_prime()
(in
maths_fns.ri_prime
)
func_mf()
(in
Mf
)
fix()
(in
Fix
)
func_d2ri_djwdr_prime()
(in
maths_fns.ri_prime
)
func_ri_prime()
(in
maths_fns.ri_prime
)
Fletcher_reeves
(in
minimise.fletcher_reeves_cg
)
func_d2ri_djwidjwj_prime()
(in
maths_fns.ri_prime
)
func_ri_prime_rex()
(in
maths_fns.ri_prime
)
fletcher_reeves()
(in
minimise.fletcher_reeves_cg
)
func_d2ri_dr2_prime()
(in
maths_fns.ri_prime
)
func_test()
(in
Min
)
G
gc()
(in
Nuclei
)
get_pk()
(in
Ncg
)
gpl
(in
prompt
)
general_text()
(in
Iso3D
)
get_pk()
(in
Steihaug
)
GPL
(in
prompt.gpl
)
generate_script()
(in
RelaxMinimiseThread
)
get_string()
(in
Specific_setup
)
gpl()
(in
prompt.gpl
)
Generic
(in
generic_fns.main
)
get_tau()
(in
Steihaug
)
grace
(in
generic_fns
)
generic
(in
minimise
)
gh()
(in
Nuclei
)
Grace
(in
generic_fns.grace
)
generic_fns
gmw()
(in
Hessian_mods
)
grace
(in
prompt
)
generic_minimise()
(in
minimise.generic
)
gmw()
(in
minimise.hessian_mods.gmw81
)
Grace
(in
prompt.grace
)
get_chi2()
(in
Palmer
)
gmw81
(in
minimise.hessian_mods
)
grad_test()
(in
Min
)
get_data()
(in
Grace
)
gmw81_old
(in
minimise.hessian_mods
)
grid
(in
minimise
)
get_date()
(in
Base_Map
)
gmw_old()
(in
Hessian_mods
)
grid()
(in
minimise.grid
)
get_mf_data()
(in
Palmer
)
gmw_old()
(in
minimise.hessian_mods.gmw81_old
)
grid_search()
(in
Minimise
)
get_param_names()
(in
Base_Map
)
gn()
(in
Nuclei
)
grid_search()
(in
Minimisation
)
get_param_names()
(in
Model_free
)
go()
(in
Nuclei
)
grid_search()
(in
Model_free
)
get_param_values()
(in
Model_free
)
gp()
(in
Nuclei
)
grid_search_setup()
(in
Model_free
)
H
help
(in
prompt
)
hessian_type_and_mod()
(in
Min
)
Hestenes_stiefel
(in
minimise.hestenes_stiefel_cg
)
Hessian_mods
(in
minimise.base_classes
)
hessian_update_bfgs()
(in
Dogleg
)
hestenes_stiefel()
(in
minimise.hestenes_stiefel_cg
)
hessian_mods
(in
minimise
)
hessian_update_newton()
(in
Dogleg
)
hestenes_stiefel_cg
(in
minimise
)
I
i
(in
Minimisation
)
init_res_r1_data()
(in
Mf
)
interpreter
(in
prompt
)
init()
(in
Diffusion_tensor
)
initial_values()
(in
Monte_carlo
)
Interpreter
(in
prompt.interpreter
)
init()
(in
Diffusion_tensor
)
initial_values()
(in
Monte_carlo
)
io
init()
(in
Init_data
)
intensity
(in
generic_fns
)
IO
(in
io
)
init_data
(in
prompt
)
Intensity
(in
generic_fns.intensity
)
Iso3D
(in
dx.isosurface_3D
)
Init_data
(in
prompt.init_data
)
interact_prompt()
(in
prompt.interpreter
)
isosurface_3D
(in
dx
)
init_diff_data()
(in
Mf
)
interact_script()
(in
prompt.interpreter
)
init_res_data()
(in
Mf
)
interpolate
(in
minimise.line_search
)
J
jiter_factor()
(in
minimise.hessian_mods.se99
)
jw_mapping
(in
prompt
)
Jw_mapping
(in
specific_fns.jw_mapping
)
jw_funcs()
(in
Specific_setup
)
Jw_mapping
(in
prompt.jw_mapping
)
jw_mf
(in
maths_fns
)
jw_mapping
(in
maths_fns
)
jw_mapping
(in
specific_fns
)
jw_mf_comps
(in
maths_fns
)
K
kill()
(in
RelaxPopen3
)
kill()
(in
RelaxThread
)
L
levenberg_marquardt
(in
minimise
)
line_search_options()
(in
Line_search
)
load()
(in
State
)
Levenberg_marquardt
(in
minimise.levenberg_marquardt
)
linear_constraints()
(in
Model_free
)
load_PDB_sequence()
(in
Sequence
)
levenberg_marquardt()
(in
minimise.levenberg_marquardt
)
list_of_runs()
(in
Runs
)
load_structures()
(in
PDB
)
Lh
(in
prompt.command
)
Ll
(in
prompt.command
)
log()
(in
IO
)
licence()
(in
Relax
)
lm_dri()
(in
Mf
)
logging_off()
(in
IO
)
Line_search
(in
minimise.base_classes
)
load()
(in
PDB
)
Ls
(in
prompt.command
)
line_search
(in
minimise
)
load()
(in
State
)
M
main
(in
generic_fns
)
Min
(in
minimise.base_classes
)
Model_selection
(in
generic_fns.model_selection
)
main
(in
specific_fns
)
minimisation
(in
prompt
)
model_selection
(in
prompt
)
map()
(in
OpenDX
)
Minimisation
(in
prompt.minimisation
)
model_selection()
(in
Modsel
)
map()
(in
OpenDX
)
minimise
(in
generic_fns
)
model_setup()
(in
Model_free
)
map_axes()
(in
Base_Map
)
Minimise
(in
generic_fns.minimise
)
model_statistics()
(in
Model_free
)
map_bounds()
(in
Diffusion_tensor
)
minimise
Modsel
(in
prompt.model_selection
)
map_bounds()
(in
Model_free
)
minimise()
(in
Minimise
)
molmol
(in
generic_fns
)
map_labels()
(in
Diffusion_tensor
)
minimise()
(in
Min
)
Molmol
(in
generic_fns.molmol
)
map_space()
(in
Base_Map
)
minimise()
(in
Method_of_multipliers
)
molmol
(in
prompt
)
map_text()
(in
Iso3D
)
minimise()
(in
Minimisation
)
Molmol
(in
prompt.molmol
)
Mapping
(in
maths_fns.jw_mapping
)
minimise()
(in
Model_free
)
monte_carlo
(in
generic_fns
)
maths_fns
mkdir()
(in
IO
)
Monte_carlo
(in
generic_fns.monte_carlo
)
method_of_multipliers
(in
minimise
)
mkdir()
(in
RelaxThread
)
monte_carlo
(in
prompt
)
Method_of_multipliers
(in
minimise.method_of_multipliers
)
model_free
(in
prompt
)
Monte_carlo
(in
prompt.monte_carlo
)
method_of_multipliers()
(in
minimise.method_of_multipliers
)
Model_free
(in
prompt.model_free
)
more_thuente
(in
minimise.line_search
)
mf
(in
maths_fns
)
model_free
(in
specific_fns
)
more_thuente()
(in
minimise.line_search.more_thuente
)
Mf
(in
maths_fns.mf
)
Model_free
(in
specific_fns.model_free
)
mt()
(in
Line_search
)
mf_funcs()
(in
Specific_setup
)
model_selection
(in
generic_fns
)
N
ncg
(in
minimise
)
new_param_func()
(in
Steepest_descent
)
Noe
(in
specific_fns.noe
)
Ncg
(in
minimise.ncg
)
new_param_func()
(in
Steihaug
)
noe()
(in
Specific_setup
)
ncg()
(in
minimise.ncg
)
newton
(in
minimise
)
nuclei
(in
generic_fns
)
new_param_func()
(in
Conjugate_gradient
)
Newton
(in
minimise.newton
)
Nuclei
(in
generic_fns.nuclei
)
new_param_func()
(in
Bfgs
)
newton()
(in
minimise.newton
)
nuclei
(in
prompt
)
new_param_func()
(in
Cauchy_point
)
no_search()
(in
Line_search
)
Nuclei
(in
prompt.nuclei
)
new_param_func()
(in
Coordinate_descent
)
nocedal_wright_interpol
(in
minimise.line_search
)
nuclei()
(in
Nuclei
)
new_param_func()
(in
Dogleg
)
nocedal_wright_interpol()
(in
minimise.line_search.nocedal_wright_interpol
)
num_instances()
(in
Jw_mapping
)
new_param_func()
(in
Exact_trust_region
)
nocedal_wright_wolfe
(in
minimise.line_search
)
num_instances()
(in
Model_free
)
new_param_func()
(in
Levenberg_marquardt
)
nocedal_wright_wolfe()
(in
minimise.line_search.nocedal_wright_wolfe
)
nwi()
(in
Line_search
)
new_param_func()
(in
Ncg
)
noe
(in
prompt
)
nww()
(in
Line_search
)
new_param_func()
(in
Newton
)
Noe
(in
prompt.noe
)
new_param_func()
(in
Simplex
)
noe
(in
specific_fns
)
O
off()
(in
Monte_carlo
)
on()
(in
Monte_carlo
)
open_write_file()
(in
IO
)
off()
(in
Monte_carlo
)
open_file()
(in
Palmer
)
opendx
(in
dx
)
old_cg_conv_test()
(in
Conjugate_gradient
)
open_pdb()
(in
Molmol
)
OpenDX
(in
dx.opendx
)
old_param_func()
(in
Exact_trust_region
)
open_pipe()
(in
Molmol
)
OpenDX
(in
prompt.dx
)
on()
(in
Monte_carlo
)
open_read_file()
(in
IO
)
order_simplex()
(in
Simplex
)
P
Package
(in
script-package
)
pipe_open()
(in
Molmol
)
pre_locked_code()
(in
RelaxHostThread
)
palmer
(in
generic_fns
)
point_text()
(in
Iso3D
)
pre_locked_code()
(in
RelaxThread
)
Palmer
(in
generic_fns.palmer
)
Polak_ribiere
(in
minimise.polak_ribiere_cg
)
print_data()
(in
minimise.line_search.more_thuente
)
palmer
(in
prompt
)
polak_ribiere()
(in
minimise.polak_ribiere_cg
)
print_data()
(in
minimise.line_search.nocedal_wright_interpol
)
Palmer
(in
prompt.palmer
)
polak_ribiere_cg
(in
minimise
)
print_data()
(in
minimise.line_search.nocedal_wright_wolfe
)
pdb
(in
generic_fns
)
Polak_ribiere_plus
(in
minimise.polak_ribiere_plus_cg
)
printout()
(in
Method_of_multipliers
)
PDB
(in
generic_fns.pdb
)
polak_ribiere_plus()
(in
minimise.polak_ribiere_plus_cg
)
processes
pdb
(in
prompt
)
polak_ribiere_plus_cg
(in
minimise
)
program_text()
(in
Iso3D
)
PDB
(in
prompt.pdb
)
post_locked_code()
(in
RelaxMinimiseThread
)
prompt
pdb()
(in
PDB
)
post_locked_code()
(in
RelaxHostThread
)
prompt()
(in
prompt.interpreter
)
Q
quadratic_fafbga()
(in
minimise.line_search.interpolate
)
quadratic_gagb()
(in
minimise.line_search.interpolate
)
R
r1_comps()
(in
maths_fns.ri_comps
)
RelaxLenError
(in
RelaxErrors
)
results
(in
prompt
)
read()
(in
Intensity
)
RelaxListError
(in
RelaxErrors
)
Results
(in
prompt.results
)
read()
(in
Results
)
RelaxListFloatError
(in
RelaxErrors
)
return_conversion_factor()
(in
Diffusion_tensor
)
read()
(in
Sequence
)
RelaxListIntError
(in
RelaxErrors
)
return_conversion_factor()
(in
Minimise
)
read()
(in
Value
)
RelaxListNumError
(in
RelaxErrors
)
return_conversion_factor()
(in
Jw_mapping
)
read()
(in
Noe
)
RelaxListStrError
(in
RelaxErrors
)
return_conversion_factor()
(in
Model_free
)
read()
(in
Relax_data
)
RelaxMfError
(in
RelaxErrors
)
return_conversion_factor()
(in
Noe
)
read()
(in
Relax_fit
)
RelaxMinimiseThread
(in
generic_fns.minimise
)
return_conversion_factor()
(in
Relax_fit
)
read()
(in
Results
)
RelaxMinParentThread
(in
generic_fns.minimise
)
return_data()
(in
Common_functions
)
read()
(in
Select
)
RelaxNoMfModelError
(in
RelaxErrors
)
return_data_name()
(in
Diffusion_tensor
)
read()
(in
Sequence
)
RelaxNoneError
(in
RelaxErrors
)
return_data_name()
(in
Minimise
)
read()
(in
Threading
)
RelaxNoneFloatError
(in
RelaxErrors
)
return_data_name()
(in
Jw_mapping
)
read()
(in
Unselect
)
RelaxNoneFloatListError
(in
RelaxErrors
)
return_data_name()
(in
Model_free
)
read()
(in
Value
)
RelaxNoneIntError
(in
RelaxErrors
)
return_data_name()
(in
Noe
)
read()
(in
Noe
)
RelaxNoneIntStrError
(in
RelaxErrors
)
return_data_name()
(in
Relax_fit
)
read()
(in
Rx_data
)
RelaxNoneListError
(in
RelaxErrors
)
return_eigenvalues()
(in
Diffusion_tensor
)
read()
(in
Relax_fit
)
RelaxNoneNumError
(in
RelaxErrors
)
return_error()
(in
Common_functions
)
read()
(in
Threading
)
RelaxNoneStrError
(in
RelaxErrors
)
return_grace_string()
(in
Minimise
)
read_columnar_col_numbers()
(in
Model_free
)
RelaxNoneStrListError
(in
RelaxErrors
)
return_grace_string()
(in
Jw_mapping
)
read_columnar_diff_tensor()
(in
Model_free
)
RelaxNoneTupleError
(in
RelaxErrors
)
return_grace_string()
(in
Model_free
)
read_columnar_find_index()
(in
Model_free
)
RelaxNoPdbError
(in
RelaxErrors
)
return_grace_string()
(in
Noe
)
read_columnar_model_free_data()
(in
Model_free
)
RelaxNoResError
(in
RelaxErrors
)
return_grace_string()
(in
Relax_fit
)
read_columnar_param_set()
(in
Model_free
)
RelaxNoRiError
(in
RelaxErrors
)
return_units()
(in
Diffusion_tensor
)
read_columnar_pdb()
(in
Model_free
)
RelaxNoRunError
(in
RelaxErrors
)
return_units()
(in
Minimise
)
read_columnar_relax_data()
(in
Model_free
)
RelaxNoSequenceError
(in
RelaxErrors
)
return_units()
(in
Jw_mapping
)
read_columnar_results()
(in
Model_free
)
RelaxNoSimError
(in
RelaxErrors
)
return_units()
(in
Model_free
)
read_columnar_results()
(in
Noe
)
RelaxNoTensorError
(in
RelaxErrors
)
return_units()
(in
Noe
)
read_columnar_results()
(in
Relax_fit
)
RelaxNoValueError
(in
RelaxErrors
)
return_units()
(in
Relax_fit
)
read_columnar_sequence()
(in
Model_free
)
RelaxNoVectorsError
(in
RelaxErrors
)
return_value()
(in
Minimise
)
read_columnar_xh_vect()
(in
Model_free
)
RelaxNucleusError
(in
RelaxErrors
)
return_value()
(in
Jw_mapping
)
reflect()
(in
Simplex
)
RelaxNumError
(in
RelaxErrors
)
return_value()
(in
Model_free
)
regexp_doc()
(in
prompt.doc_string
)
RelaxNumTupleError
(in
RelaxErrors
)
return_value()
(in
Noe
)
Relax
(in
script-relax
)
RelaxParentThread
(in
thread_classes
)
return_value()
(in
Rx_data
)
relax_class_help
(in
prompt.help
)
RelaxParser
(in
script-relax
)
return_value()
(in
Relax_fit
)
relax_data
(in
prompt
)
RelaxPdbError
(in
RelaxErrors
)
reverse()
(in
Selection
)
Relax_data
(in
prompt.relax_data
)
RelaxPdbLoadError
(in
RelaxErrors
)
reverse()
(in
Select
)
relax_data
(in
specific_fns
)
RelaxPopen3
(in
processes
)
reverse()
(in
Unselect
)
relax_fit
(in
prompt
)
RelaxProgError
(in
RelaxErrors
)
ri
(in
maths_fns
)
Relax_fit
(in
prompt.relax_fit
)
RelaxProgFailError
(in
RelaxErrors
)
ri_comps
(in
maths_fns
)
relax_fit
(in
specific_fns
)
RelaxRegExpError
(in
RelaxErrors
)
ri_comps()
(in
maths_fns.ri_comps
)
Relax_fit
(in
specific_fns.relax_fit
)
RelaxResultsThread
(in
thread_classes
)
ri_comps_csa()
(in
maths_fns.ri_comps
)
relax_funcs()
(in
Specific_setup
)
RelaxRiError
(in
RelaxErrors
)
ri_comps_csa_rex()
(in
maths_fns.ri_comps
)
RelaxArgNotInListError
(in
RelaxErrors
)
RelaxRunError
(in
RelaxErrors
)
ri_comps_r()
(in
maths_fns.ri_comps
)
RelaxBinError
(in
RelaxErrors
)
RelaxSequenceError
(in
RelaxErrors
)
ri_comps_r_csa()
(in
maths_fns.ri_comps
)
RelaxDiffSeqError
(in
RelaxErrors
)
RelaxStrError
(in
RelaxErrors
)
ri_comps_r_csa_rex()
(in
maths_fns.ri_comps
)
RelaxDirError
(in
RelaxErrors
)
RelaxStrListStrError
(in
RelaxErrors
)
ri_comps_r_rex()
(in
maths_fns.ri_comps
)
RelaxError
(in
RelaxErrors
)
RelaxTensorError
(in
RelaxErrors
)
ri_comps_rex()
(in
maths_fns.ri_comps
)
RelaxErrors
(in
errors
)
RelaxThread
(in
thread_classes
)
ri_prime
(in
maths_fns
)
RelaxFileEmptyError
(in
RelaxErrors
)
RelaxTupleError
(in
RelaxErrors
)
run
(in
prompt
)
RelaxFileError
(in
RelaxErrors
)
RelaxUnknownParamCombError
(in
RelaxErrors
)
Run
(in
prompt.run
)
RelaxFileOverwriteError
(in
RelaxErrors
)
RelaxUnknownParamError
(in
RelaxErrors
)
run()
(in
OpenDX
)
RelaxFloatError
(in
RelaxErrors
)
RelaxValueError
(in
RelaxErrors
)
run()
(in
Interpreter
)
RelaxFuncSetupError
(in
RelaxErrors
)
remote_command()
(in
RelaxThread
)
run()
(in
RelaxKillThread
)
RelaxFunctionError
(in
RelaxErrors
)
remove_tm()
(in
Model_free
)
run()
(in
RelaxParentThread
)
RelaxHostParentThread
(in
thread_classes
)
remove_tm()
(in
Model_free
)
run()
(in
RelaxResultsThread
)
RelaxHostThread
(in
thread_classes
)
res()
(in
Select
)
run()
(in
RelaxThread
)
RelaxIntError
(in
RelaxErrors
)
res()
(in
Unselect
)
run_script()
(in
prompt.interpreter
)
RelaxIntListIntError
(in
RelaxErrors
)
reset_min_stats()
(in
Minimise
)
runcode()
(in
prompt.interpreter
)
RelaxIntStrError
(in
RelaxErrors
)
Residue
(in
data
)
runs
(in
generic_fns
)
RelaxInvalidDataError
(in
RelaxErrors
)
ResidueList
(in
data
)
Runs
(in
generic_fns.runs
)
RelaxInvalidError
(in
RelaxErrors
)
results
(in
generic_fns
)
Rx_data
(in
specific_fns.relax_data
)
RelaxKillThread
(in
thread_classes
)
Results
(in
generic_fns.results
)
S
safeguard()
(in
Exact_trust_region
)
set()
(in
Model_free
)
skip_function()
(in
Model_free
)
save()
(in
State
)
set_error()
(in
Jw_mapping
)
sort()
(in
Sequence
)
save()
(in
State
)
set_error()
(in
Model_free
)
sort()
(in
Sequence
)
script()
(in
Interpreter
)
set_error()
(in
Noe
)
sort_cmpfunc()
(in
Sequence
)
script-clean_up
set_error()
(in
Relax_fit
)
sort_params()
(in
Value
)
script-package
set_frq()
(in
Jw_mapping
)
spacing()
(in
Relax
)
script-relax
set_frq()
(in
Jw_mapping
)
Specific
(in
specific_fns.main
)
se99
(in
minimise.hessian_mods
)
set_intro_string()
(in
Relax
)
specific_fns
se99()
(in
Hessian_mods
)
set_values()
(in
Nuclei
)
specific_setup
(in
specific_fns
)
se99()
(in
minimise.hessian_mods.se99
)
set_vector()
(in
PDB
)
Specific_setup
(in
specific_fns.specific_setup
)
sel_all()
(in
Selection
)
setup()
(in
Monte_carlo
)
SpecificData
(in
data
)
sel_read()
(in
Selection
)
setup()
(in
Monte_carlo
)
sphere()
(in
Diffusion_tensor
)
sel_res()
(in
Selection
)
setup()
(in
Specific_setup
)
spheroid()
(in
Diffusion_tensor
)
select
(in
prompt
)
setup_bfgs()
(in
Bfgs
)
spheroid_frame()
(in
Angles
)
Select
(in
prompt.select
)
setup_conv_tests()
(in
Min
)
split()
(in
SplitIO
)
select()
(in
Model_selection
)
setup_equations()
(in
Mf
)
SplitIO
(in
io
)
select_all_sims()
(in
Monte_carlo
)
setup_hessian_mod()
(in
Hessian_mods
)
start_child()
(in
RelaxThread
)
select_model()
(in
Model_free
)
setup_line_search()
(in
Line_search
)
state
(in
generic_fns
)
select_model()
(in
Model_free
)
setup_newton()
(in
Newton
)
State
(in
generic_fns.state
)
selection
(in
generic_fns
)
shrink()
(in
Simplex
)
state
(in
prompt
)
Selection
(in
generic_fns.selection
)
sim_init_values()
(in
Model_free
)
State
(in
prompt.state
)
sequence
(in
generic_fns
)
sim_pack_data()
(in
Common_functions
)
steepest_descent
(in
minimise
)
Sequence
(in
generic_fns.sequence
)
sim_return_chi2()
(in
Model_free
)
Steepest_descent
(in
minimise.steepest_descent
)
sequence
(in
prompt
)
sim_return_param()
(in
Jw_mapping
)
steepest_descent()
(in
minimise.steepest_descent
)
Sequence
(in
prompt.sequence
)
sim_return_param()
(in
Model_free
)
Steihaug
(in
minimise.steihaug_cg
)
set()
(in
Diffusion_tensor
)
sim_return_selected()
(in
Model_free
)
steihaug()
(in
minimise.steihaug_cg
)
set()
(in
Minimise
)
sim_set_selected()
(in
Model_free
)
steihaug_cg
(in
minimise
)
set()
(in
Value
)
simplex
(in
minimise
)
strip()
(in
IO
)
set()
(in
Value
)
Simplex
(in
minimise.simplex
)
system()
(in
prompt.command
)
set()
(in
Jw_mapping
)
simplex()
(in
minimise.simplex
)
T
tab_completion
(in
prompt
)
test_relax()
(in
RelaxHostThread
)
thread_clean_up()
(in
RelaxParentThread
)
Tab_completion
(in
prompt.tab_completion
)
test_save_file()
(in
RelaxThread
)
thread_object()
(in
RelaxMinParentThread
)
tee()
(in
IO
)
test_ssh()
(in
RelaxHostThread
)
thread_object()
(in
RelaxHostParentThread
)
test_dir()
(in
Package
)
test_wd()
(in
RelaxHostThread
)
ThreadData
(in
thread_classes
)
test_dir()
(in
RelaxThread
)
tests()
(in
Model_selection
)
Threading
(in
prompt.thread
)
test_labels()
(in
Rx_data
)
text
(in
_Helper
)
Threading
(in
thread_classes
)
test_mod()
(in
Levenberg_marquardt
)
text
(in
_Helper_python
)
Trust_region
(in
minimise.base_classes
)
test_mode()
(in
Relax
)
thread
(in
prompt
)
trust_region_update()
(in
Trust_region
)
test_params()
(in
Diffusion_tensor
)
thread_classes
U
unit_axes()
(in
Diffusion_tensor
)
update()
(in
Conjugate_gradient
)
update()
(in
Ncg
)
unmodified_hessian()
(in
Hessian_mods
)
update()
(in
Min
)
update()
(in
Simplex
)
unsel_all()
(in
Selection
)
update()
(in
Cauchy_point
)
update()
(in
Steepest_descent
)
unsel_read()
(in
Selection
)
update()
(in
Coordinate_descent
)
update()
(in
Steihaug
)
unsel_res()
(in
Selection
)
update()
(in
Dogleg
)
update_bfgs()
(in
Bfgs
)
unselect
(in
prompt
)
update()
(in
Exact_trust_region
)
update_data_structures()
(in
Rx_data
)
Unselect
(in
prompt.unselect
)
update()
(in
Levenberg_marquardt
)
update_global_data_structures()
(in
Rx_data
)
unselect()
(in
Model_free
)
update()
(in
minimise.line_search.more_thuente
)
update_newton()
(in
Newton
)
V
valid_hessian_mod()
(in
Hessian_mods
)
version
(in
script-relax
)
view()
(in
Molmol
)
valid_line_search()
(in
Line_search
)
view
(in
prompt
)
view()
(in
View
)
value
(in
generic_fns
)
View
(in
prompt.view
)
view()
(in
Vmd
)
Value
(in
generic_fns.value
)
view()
(in
Grace
)
vmd
(in
generic_fns
)
value
(in
prompt
)
view()
(in
Molmol
)
Vmd
(in
generic_fns.vmd
)
Value
(in
prompt.value
)
view()
(in
Vmd
)
vmd
(in
prompt
)
vectors()
(in
PDB
)
view()
(in
Grace
)
Vmd
(in
prompt.vmd
)
W
weights
(in
maths_fns
)
write()
(in
Relax_data
)
write_columnar_line()
(in
Noe
)
wrap_angles()
(in
Angles
)
write()
(in
Results
)
write_columnar_line()
(in
Relax_fit
)
write()
(in
Grace
)
write()
(in
Sequence
)
write_columnar_results()
(in
Jw_mapping
)
write()
(in
Molmol
)
write()
(in
Value
)
write_columnar_results()
(in
Model_free
)
write()
(in
Results
)
write()
(in
Noe
)
write_columnar_results()
(in
Noe
)
write()
(in
Sequence
)
write()
(in
Rx_data
)
write_columnar_results()
(in
Relax_fit
)
write()
(in
Value
)
write()
(in
Relax_fit
)
write_data()
(in
Grace
)
write()
(in
SplitIO
)
write_columnar_line()
(in
Jw_mapping
)
write_data()
(in
Value
)
write()
(in
Grace
)
write_columnar_line()
(in
Model_free
)
write_header()
(in
Grace
)
Z
zoom()
(in
minimise.line_search.nocedal_wright_wolfe
)
_
__call__()
(in
_Helper
)
__init__()
(in
RelaxStrError
)
__init__()
(in
Fix
)
__call__()
(in
_Helper_python
)
__init__()
(in
RelaxStrListStrError
)
__init__()
(in
Grace
)
__description__
(in
Monte_carlo
)
__init__()
(in
RelaxTensorError
)
__init__()
(in
Init_data
)
__doc__
(in
prompt
)
__init__()
(in
RelaxTupleError
)
__init__()
(in
Interpreter
)
__init__()
(in
Data
)
__init__()
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Relax
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Ll
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RelaxNoneStrListError
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GPL
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_Exit
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RelaxPdbError
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Steepest_descent
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RelaxPdbLoadError
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Steihaug
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thread_classes
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RelaxProgError
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RelaxPopen3
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prompt.interpreter
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RelaxProgFailError
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prompt.help
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RelaxRegExpError
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Dasha
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prompt.help
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RelaxRiError
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Diffusion_tensor
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Interpreter
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RelaxRunError
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OpenDX
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_on()
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Interpreter
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RelaxSequenceError
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(in
Eliminate
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