Package specific_analyses

source code

Package for the specific analysis API.

Submodules

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specific_analyses.api: The specific analysis API.
specific_analyses.api_base: The module defining the analysis specific API.
specific_analyses.api_common: Common API methods for use in different specific analyses.
specific_analyses.consistency_tests: The consistency testing analysis of multi-field relaxation data.
- specific_analyses.consistency_tests.api: The consistency testing analysis API object.
- specific_analyses.consistency_tests.parameter_object: The module for the consistency testing parameter list object.
- specific_analyses.consistency_tests.uf: The consistency testing analysis user functions.
specific_analyses.frame_order: The frame order analysis of domain dynamics.
- specific_analyses.frame_order.api: The frame order API object.
- specific_analyses.frame_order.checks: Module for checks for the frame order analysis.
- specific_analyses.frame_order.data: Module for handling the frame order data in the relax data store.
- specific_analyses.frame_order.optimisation: Module for the optimisation of the frame order models.
- specific_analyses.frame_order.parameter_object: The module for the frame order parameter list object.
- specific_analyses.frame_order.parameters: Module for handling the frame order model parameters.
- specific_analyses.frame_order.uf: Module for all of the frame order specific user functions.
specific_analyses.hybrid: Analysis specific code for the hybridisation of different data pipes.
specific_analyses.jw_mapping: The reduced spectral density mapping analysis.
- specific_analyses.jw_mapping.api: The reduced spectral density mapping API object.
- specific_analyses.jw_mapping.parameter_object: The module for the reduced spectral density mapping parameter list object.
- specific_analyses.jw_mapping.uf: Module for all of the reduced spectral density mapping specific user functions.
specific_analyses.model_free: The Lipari-Szabo model-free analysis.
- specific_analyses.model_free.api: The Lipari-Szabo model-free analysis API object.
- specific_analyses.model_free.back_compat: The model-free analysis relax 1.2 result creation and processing functions.
- specific_analyses.model_free.bmrb: The model-free analysis BMRB functions.
- specific_analyses.model_free.data: The Lipari-Szabo model-free analysis base data functions.
- specific_analyses.model_free.macro_base: The Molmol and Pymol base macro methods of the specific API for model-free analysis.
- specific_analyses.model_free.model: The model-free analysis parameter functions.
- specific_analyses.model_free.molmol: The Molmol macro methods of the specific API for model-free analysis.
- specific_analyses.model_free.optimisation: The model-free analysis optimisation functions.
- specific_analyses.model_free.parameter_object: The module for the Lipari-Szabo model-free parameter list object.
- specific_analyses.model_free.parameters: The model-free analysis parameter functions.
- specific_analyses.model_free.pymol: The Pymol macro methods of the specific API for model-free analysis.
- specific_analyses.model_free.uf: The model-free analysis user functions.
specific_analyses.n_state_model: The N-state model or structural ensemble analysis.
- specific_analyses.n_state_model.api: The N-state model or structural ensemble analysis.
- specific_analyses.n_state_model.data: The N-state model or structural ensemble analysis base data handling.
- specific_analyses.n_state_model.optimisation: The N-state model or structural ensemble analysis optimisation functions.
- specific_analyses.n_state_model.parameter_object: The module for the N-state model parameter list object.
- specific_analyses.n_state_model.parameters: The N-state model or structural ensemble analysis parameter handling.
- specific_analyses.n_state_model.uf: The N-state model or structural ensemble analysis user functions.
specific_analyses.noe: The steady-state heteronuclear NOE analysis.
- specific_analyses.noe.api: The steady-state heteronuclear NOE API object.
- specific_analyses.noe.parameter_object: The module for the steady-state heteronuclear NOE parameter list object.
- specific_analyses.noe.uf: Module for all of the steady-state heteronuclear NOE specific user functions.
specific_analyses.parameter_object: The parameter list object base class for the specific analyses.
specific_analyses.relax_disp: The relaxation dispersion analysis.
- specific_analyses.relax_disp.api: The relaxation dispersion API object.
- specific_analyses.relax_disp.catia: Functions for interfacing with Flemming Hansen's CATIA program.
- specific_analyses.relax_disp.checks: Module for functions for checking different aspects of the dispersion setup.
- specific_analyses.relax_disp.cpmgfit: Functions for interfacing with Art Palmer's CPMGFit program.
- specific_analyses.relax_disp.data: Module for handling relaxation dispersion data within the relax data store.
- specific_analyses.relax_disp.nessy: Functions for interfacing with Michael Bieri's NESSY program.
- specific_analyses.relax_disp.optimisation: Module for the optimisation of the relaxation dispersion models.
- specific_analyses.relax_disp.parameter_object: The module for the relaxation dispersion parameter list object.
- specific_analyses.relax_disp.parameters: Functions relating to the parameters of the relaxation dispersion models.
- specific_analyses.relax_disp.sherekhan: Functions for interfacing with Adam Mazur's ShereKhan program.
- specific_analyses.relax_disp.uf: The relaxation dispersion API object.
- specific_analyses.relax_disp.variables: Variables for the relaxation dispersion specific analysis.
specific_analyses.relax_fit: The R1 and R2 exponential relaxation curve fitting analysis.
- specific_analyses.relax_fit.api: The R1 and R2 exponential relaxation curve fitting API object.
- specific_analyses.relax_fit.optimisation: The R1 and R2 exponential relaxation curve fitting optimisation functions.
- specific_analyses.relax_fit.parameter_object: The module for the relaxation curve fitting parameter list object.
- specific_analyses.relax_fit.parameters: The R1 and R2 exponential relaxation curve fitting parameter functions.
- specific_analyses.relax_fit.uf: The R1 and R2 exponential relaxation curve fitting user functions.

Variables

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__package__ = None
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