Re: [bug #8059] RelaxFault in eliminate() -- December 21, 2006

Chris,

I've downloaded the saved state and have noticed something strange -
there is no diffusion tensor data setup for models m6, m7, and m8?!?
Would you be able to attach the full script (or scripts) used to get
to this point?  Was the model-free data read out of results files?  I
have a feeling that this missing data is the issue and that something
prior to the eliminate() user function is causing the problem.

In the function 'self.determine_param_set_type()' of the file
'specific_fns/model_free.py', None is returned if no diffusion tensor
has been setup.  I might change this to raise the RelaxNoTensorError
instead of returning None so that the error message is more
comprehensible than the RelaxFault.

Edward

On 12/20/06, Chris MacRaild <NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:


URL:
  <http://gna.org/bugs/?8059>

                 Summary: RelaxFault in eliminate()
                 Project: relax
            Submitted by: macraild
            Submitted on: Tuesday 12/19/2006 at 14:43
                Category: relax's source code
                Severity: 3 - Normal
                Priority: 5 - Normal
                  Status: None
                 Privacy: Public
             Assigned to: None
         Originator Name:
        Originator Email:
             Open/Closed: Open
         Discussion Lock: Any
                 Release: Other (missing version)
        Operating System: None

    _______________________________________________________

Details:

Traceback:

relax> eliminate(run=None, function=None, args=None)

relax> state.save(file='relax_state_20061912_143734', dir=None, force=0,
compress_type=1)
Opening the file 'relax_state_20061912_143734.bz2' for writing.
Traceback (most recent call last):
  File "test_modsel.py", line 20, in ?
    eliminate()
  File "/home/chris/relax_devel/1.2/prompt/eliminate.py", line 97, in
eliminate
    self.relax.generic.eliminate.eliminate(run=run, function=function,
args=args)
  File "/home/chris/relax_devel/1.2/generic_fns/eliminate.py", line 56, in
eliminate
    for i in xrange(num_instances(self.run)):
  File "/home/chris/relax_devel/1.2/specific_fns/model_free.py", line 2605,
in num_instances
    raise RelaxFault
RelaxFault: RelaxError: Impossible to be here, please re-run relax with the
'--debug' flag and summit a bug report at https://gna.org/projects/relax/.


The problem appears to be trigered when eliminate() is called with one or
more models without any selected residues.

The saved state is attached.

    _______________________________________________________

File Attachments:


-------------------------------------------------------
Date: Tuesday 12/19/2006 at 14:43  Name: relax_state_20061912_143734.bz2
Size: 28kB   By: macraild

<http://gna.org/bugs/download.php?file_id=1701>

    _______________________________________________________

Reply to this item at:

  <http://gna.org/bugs/?8059>

_______________________________________________
  Message sent via/by Gna!
  http://gna.org/


_______________________________________________
relax (http://nmr-relax.com)

This is the relax-devel mailing list
relax-devel@xxxxxxx

To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel

Re: [bug #8059] RelaxFault in eliminate()

Header

Content

Related Messages