Re: ENC 2009 poster. -- March 23, 2009 - 17:58

Cheers.  Also, would you have a few lines describing your figure?  So
I can answer questions correctly or add it as text into the poster if
there is room (I've updated the poster with one of your figures, so
far).

Regards,

Edward



2009/3/23 Sébastien Morin <sebastien.morin.1@xxxxxxxxx>:
> Edward d'Auvergne wrote:
> > 2009/3/23 Sébastien Morin <sebastien.morin.1@xxxxxxxxx>:
> >
> > > Hi Ed,
> > >
> > > The poster looks great ! The design is very attractive and the color
> > > blend
> > > is also very nice !
> >
> > Thanks.  The butterfly and title should hopefully get people's
> > attention.  And the pictures of diffusion tensors, etc. is a great
> > idea that should help.
> >
> >
> >
> > > Here are a few typos I found:
> > >
> > > 1. Sub-section "Interfacing with other programs"
> > >  effectively using these ARE replacement optimisation engines
> > >     -> effectively using these AS replacement optimisation engines
> > >
> > > 2. Section "The power of open source"
> > >  all RESOURSES
> > >     -> all RESOURCES
> > >  will be easily ACCESSABLE
> > >     -> will be easily ACCESSIBLE
> > >
> > > 3, Sub-section "Relaxation data consistency"
> > >  the consistency of experimentally measured relaxation data
> > >     -> the consistency of MULTIPLE-FIELD experimentally measured
> > > relaxation
> > > data
> >
> > Thanks for picking these up.  It was a rough draft so I hadn't checked
> > for this yet.  I think I've used the word 'accessible' too much there
> > actually.
> >
> >
> >
> > > Concerning a potential figure to add for the consistency sub-section, I
> > > could propose one from the supplementary material of the paper you
> > > referenced (Morin & Gagné, Biophys J, 2009 ; which should be out soon,
> > > hopefully). Please find the eps figure as well as the grace file:
> > >  http://maple.rsvs.ulaval.ca/users/semor/tmp/consistency__J0_semor.eps
> > >  http://maple.rsvs.ulaval.ca/users/semor/tmp/consistency__J0_semor.agr
> >
> > Right, I'll try to fit this in.  Cheers.
> >
> >
> >
> > > Moreover, I would propose maybe adding a figure for the diffusion tensor
> > > representation in the "Data visualisation" sub-section. I could propose
> > > another figure from the supplementary material of Morin & Gagné (Biophys
> > > J,
> > > 2009) which shows the diffusion tensor and the distribution of the N-H
> > > vectors along the three principal axes of diffusion for PSE-4
> > > beta-lactamase:
> > >  http://maple.rsvs.ulaval.ca/users/semor/tmp/PSE-4_tensor_xh.odg
> > > http://maple.rsvs.ulaval.ca/users/semor/tmp/PSE-4_tensor_xh.eps
> > > This figure is quite big, but a part of it could show how attractive and
> > > useful the diffusion tensor representation is !
> >
> > This is also very useful to show capabilities.  How did you remove the
> > equatorial lines in the diffusion tensors?
>
> The equatorial lines were removed manually within Pymol. For each line, I
> seleted the atoms connected using Ctrl and the center button on the mouse.
> Then, once the two atoms were selected, I removed the line using Ctrl-d.
> Note that you can then save the molecule to a new pdb file for further use.
> Moreover, if, by accident, you remove a needed line, you can re-introduce it
> using Ctrl-t.
>
> Cheers,
>
>
> Séb  :)
>
> > Cheers,
> >
> > Edward
>
>
> --
> Sébastien Morin
> PhD Student
> S. Gagné NMR Laboratory
> Université Laval & PROTEO
> Québec, Canada