Re: r11106 - /branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py -- April 28, 2010

Yes, I think we should make a dialog that already displays the sequence,so the users are able to see if the sequence is correctly read in. Iwill add this element at a later step.

What do you think? I even would prefer to have a text box, where userscan paste a sequence in, such as in CcpNmr.


Cheers

Edward d'Auvergne wrote:

Hi,

I'm not sure what should be done in the first version of the GUI.  In
the future, having a dialog/wizard which gives full access to the
sequence.read() user function would remove the need for global
settings.  Maybe this dialog/wizard could be built anyway and used to
fill out the data in data.seq_args?  It just needs a dialog with a
file selection button, and some text entries for specifying the
columns needed and the column separator (e.g. ',' for csv files from
MS Excel).  What do you think?

Regards,

Edward


On 22 April 2010 05:58,  <michael.bieri@xxxxxxxxxxxxx> wrote:

Author: michaelbieri
Date: Thu Apr 22 05:58:36 2010
New Revision: 11106

URL: http://svn.gna.org/viewcvs/relax?rev=11106&view=rev
Log:
Sequence file is imported  for Rx calculations.

The sequence file should be a list of residues in the first column of the 
file. We could add a settings text box to change the location of the sequence.

Modified:
   branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py

Modified: branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py?rev=11106&r1=11105&r2=11106&view=diff
==============================================================================
--- branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py (original)
+++ branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py Thu Apr 22 05:58:36 
2010
@@ -250,7 +250,7 @@
        data = Container()

        # The sequence data (file name, dir, mol_name_col, res_num_col, 
res_name_col, spin_num_col, spin_name_col, sep).  These are the arguments to 
the  sequence.read() user function, for more information please see the 
documentation for that function.
-        data.seq_args = ['fixme!', None, None, 2, 3, 4, 5, None]
+        data.seq_args = [ds.relax_gui.sequencefile, None, None, 1, None, 
None, None, None]

        # The file names and relaxation times.
        for i in range(len(self.data.file_list)):


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Re: r11106 - /branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py

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