Hi Ed,
The gui tests (ran from "./relax --gui-test") all pass, although with
this additional output after the relax results:
=====
2011-07-22 15:12:20.339 Python[42505:613] *** attempt to pop an unknown
autorelease pool (0x10334ca00)
=====
Thanks for reminding me of the "-d" option. However, for this case,
since the gui crashes, there is no output and the only way out is to
type "ctrl c" on the command line, thus killing the gui and its
potential output... The only way I can get and output is when kill relax
through the command "kill". Then, Mac OSX pops-up an error window with
the text below.
All the best,
Séb :)
========
Process: Python [10541]
Path:
/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.7.1 (2.7.1)
Code Type: X86-64 (Native)
Parent Process: bash [1542]
Date/Time: 2011-07-22 15:09:43.480 +0200
OS Version: Mac OS X 10.6.8 (10K540)
Report Version: 6
Interval Since Last Report: 263893 sec
Crashes Since Last Report: 1
Per-App Interval Since Last Report: 312 sec
Per-App Crashes Since Last Report: 1
Anonymous UUID: 6A9BB47A-F272-4B1A-AF3B-9AB7845EF229
Exception Type: EXC_CRASH (SIGQUIT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 libSystem.B.dylib 0x00007fff862b2d7a mach_msg_trap + 10
1 libSystem.B.dylib 0x00007fff862b33ed mach_msg + 59
2 com.apple.CoreFoundation 0x00007fff89414932 __CFRunLoopRun
+ 1698
3 com.apple.CoreFoundation 0x00007fff89413dbf
CFRunLoopRunSpecific + 575
4 com.apple.HIToolbox 0x00007fff848c67ee
RunCurrentEventLoopInMode + 333
5 com.apple.HIToolbox 0x00007fff848c65f3
ReceiveNextEventCommon + 310
6 com.apple.HIToolbox 0x00007fff848c64ac
BlockUntilNextEventMatchingListInMode + 59
7 com.apple.AppKit 0x00007fff8345ceb2 _DPSNextEvent + 708
8 com.apple.AppKit 0x00007fff8345c801 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 155
9 com.apple.AppKit 0x00007fff83697dc3 -[NSApplication
_realDoModalLoop:peek:] + 442
10 com.apple.AppKit 0x00007fff83695951 -[NSApplication
runModalForWindow:] + 129
11 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101f15bfe
wxModalEventLoop::DoRun() + 174
12 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101dec377
wxCFEventLoop::Run() + 55
13 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e5a459
wxDialog::ShowModal() + 73
14 _windows_.so 0x0000000103f65976
_wrap_Dialog_ShowModal + 102
15 org.python.python 0x00000001000c1332
PyEval_EvalFrameEx + 22626
16 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
17 org.python.python 0x00000001000c0d8a
PyEval_EvalFrameEx + 21178
18 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
19 org.python.python 0x00000001000c0d8a
PyEval_EvalFrameEx + 21178
20 org.python.python 0x00000001000c20de
PyEval_EvalFrameEx + 26126
21 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
22 org.python.python 0x000000010003dd80 function_call + 176
23 org.python.python 0x000000010000c9f2 PyObject_Call + 98
24 org.python.python 0x000000010001eebb
instancemethod_call + 363
25 org.python.python 0x000000010000c9f2 PyObject_Call + 98
26 org.python.python 0x00000001000ba817
PyEval_CallObjectWithKeywords + 87
27 _core_.so 0x00000001019ca8f2
wxPyCallback::EventThunker(wxEvent&) + 258
28 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e1e004
wxEvtHandler::ProcessEventIfMatchesId(wxEventTableEntryBase const&,
wxEvtHandler*, wxEvent&) + 84
29 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e1ef8f
wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 111
30 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e1ff9a
wxEvtHandler::TryHereOnly(wxEvent&) + 42
31 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e2000b
wxEvtHandler::ProcessEventLocally(wxEvent&) + 59
32 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e200d1
wxEvtHandler::ProcessEvent(wxEvent&) + 161
33 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e1fac6
wxEvtHandler::SafelyProcessEvent(wxEvent&) + 22
34 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000102033280
wxWindowBase::HandleWindowEvent(wxEvent&) const + 16
35 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101fef09a
wxMenuBase::SendEvent(int, int) + 218
36 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101e86544
wxMenu::HandleCommandProcess(wxMenuItem*, wxWindow*) + 100
37 com.apple.AppKit 0x00007fff835b1eda -[NSApplication
sendAction:to:from:] + 95
38 com.apple.AppKit 0x00007fff835d646a -[NSMenuItem
_corePerformAction] + 365
39 com.apple.AppKit 0x00007fff835d61d4
-[NSCarbonMenuImpl performActionWithHighlightingForItemAtIndex:] + 121
40 com.apple.AppKit 0x00007fff8385bcf4 -[NSMenu
_internalPerformActionForItemAtIndex:] + 35
41 com.apple.AppKit 0x00007fff8370d9e9
-[NSCarbonMenuImpl _carbonCommandProcessEvent:handlerCallRef:] + 136
42 com.apple.AppKit 0x00007fff835b899c
NSSLMMenuEventHandler + 321
43 com.apple.HIToolbox 0x00007fff8489f7f7
DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*,
HandlerCallRec*) + 1002
44 com.apple.HIToolbox 0x00007fff8489ed46
SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*,
HandlerCallRec*) + 395
45 com.apple.HIToolbox 0x00007fff848bca81
SendEventToEventTarget + 45
46 com.apple.HIToolbox 0x00007fff848ebc35
SendHICommandEvent(unsigned int, HICommand const*, unsigned int,
unsigned int, unsigned char, void const*, OpaqueEventTargetRef*,
OpaqueEventTargetRef*, OpaqueEventRef**) + 387
47 com.apple.HIToolbox 0x00007fff84918a0a
SendMenuCommandWithContextAndModifiers + 56
48 com.apple.HIToolbox 0x00007fff849189c2
SendMenuItemSelectedEvent + 101
49 com.apple.HIToolbox 0x00007fff849188d2
FinishMenuSelection(SelectionData*, MenuResult*, MenuResult*) + 150
50 com.apple.HIToolbox 0x00007fff848f9c27
MenuSelectCore(MenuData*, Point, double, unsigned int, OpaqueMenuRef**,
unsigned short*) + 467
51 com.apple.HIToolbox 0x00007fff848f937c
_HandleMenuSelection2 + 453
52 com.apple.AppKit 0x00007fff83489851
_NSHandleCarbonMenuEvent + 236
53 com.apple.AppKit 0x00007fff8345d362 _DPSNextEvent +
1908
54 com.apple.AppKit 0x00007fff8345c801 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 155
55 com.apple.AppKit 0x00007fff8342268f -[NSApplication
run] + 395
56 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101f15c63
wxGUIEventLoop::DoRun() + 51
57 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101dec377
wxCFEventLoop::Run() + 55
58 ..._osx_cocoau-2.9.1.0.0.dylib 0x0000000101cad218
wxAppConsoleBase::MainLoop() + 72
59 _core_.so 0x00000001019c353c
wxPyApp::MainLoop() + 76
60 _core_.so 0x0000000101a0de7f
_wrap_PyApp_MainLoop + 79
61 org.python.python 0x00000001000c1332
PyEval_EvalFrameEx + 22626
62 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
63 org.python.python 0x000000010003dd80 function_call + 176
64 org.python.python 0x000000010000c9f2 PyObject_Call + 98
65 org.python.python 0x000000010001eebb
instancemethod_call + 363
66 org.python.python 0x000000010000c9f2 PyObject_Call + 98
67 org.python.python 0x00000001000be813
PyEval_EvalFrameEx + 11587
68 org.python.python 0x00000001000c20de
PyEval_EvalFrameEx + 26126
69 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
70 org.python.python 0x000000010003dd80 function_call + 176
71 org.python.python 0x000000010000c9f2 PyObject_Call + 98
72 org.python.python 0x000000010001eebb
instancemethod_call + 363
73 org.python.python 0x000000010000c9f2 PyObject_Call + 98
74 org.python.python 0x00000001000ba817
PyEval_CallObjectWithKeywords + 87
75 org.python.python 0x000000010002214e PyInstance_New
+ 126
76 org.python.python 0x000000010000c9f2 PyObject_Call + 98
77 org.python.python 0x00000001000be813
PyEval_EvalFrameEx + 11587
78 org.python.python 0x00000001000c2f49
PyEval_EvalCodeEx + 2137
79 org.python.python 0x00000001000c3066 PyEval_EvalCode
+ 54
80 org.python.python 0x00000001000e7b2e
PyRun_FileExFlags + 174
81 org.python.python 0x00000001000e7de9
PyRun_SimpleFileExFlags + 489
82 org.python.python 0x00000001000fe75c Py_Main + 2940
83 org.python.python 0x0000000100000f14 0x100000000 + 3860
Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x00007fff862cbc0a kevent + 10
1 libSystem.B.dylib 0x00007fff862cdadd
_dispatch_mgr_invoke + 154
2 libSystem.B.dylib 0x00007fff862cd7b4
_dispatch_queue_invoke + 185
3 libSystem.B.dylib 0x00007fff862cd2de
_dispatch_worker_thread2 + 252
4 libSystem.B.dylib 0x00007fff862ccc08
_pthread_wqthread + 353
5 libSystem.B.dylib 0x00007fff862ccaa5 start_wqthread + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000010004005 rbx: 0x0000000000000000 rcx:
0x00007fff5fbfa5d8 rdx: 0x0000000000000000
rdi: 0x00007fff5fbfa710 rsi: 0x0000000007000006 rbp:
0x00007fff5fbfa630 rsp: 0x00007fff5fbfa5d8
r8: 0x0000000000002c03 r9: 0x0000000000000000 r10:
0x0000000000000800 r11: 0x0000000000000206
r12: 0x0000000000002c03 r13: 0x0000000000000800 r14:
0x00007fff5fbfa710 r15: 0x0000000007000006
rip: 0x00007fff862b2d7a rfl: 0x0000000000000206 cr2: 0x0000000100807000
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(36638) <38935851-09E4-DDAB-DB1D-30ADC39F7ED0>
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0x7fff89aa3000 - 0x7fff89be1fff com.apple.CoreData 102.1 (251)
<32233D4D-00B7-CE14-C881-6BF19FD05A03>
/System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x7fff89be2000 - 0x7fff89bfdff7 com.apple.openscripting 1.3.1
(???) <FD46A0FE-AC79-3EF7-AB4F-396D376DDE71>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff89c46000 - 0x7fff89c77fff libGLImage.dylib ??? (???)
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0x7fff89f43000 - 0x7fff89f47ff7 libCGXType.A.dylib 545.0.0
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0x7fff89f48000 - 0x7fff89fc5fef libstdc++.6.dylib 7.9.0
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0x7fff8a3ea000 - 0x7fff8a407ff7 libPng.dylib ??? (???)
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff8a408000 - 0x7fff8a41cfff libGL.dylib ??? (???)
<2ECE3B0F-39E1-3938-BF27-7205C6D0358B>
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0x7fff8a41d000 - 0x7fff8a429fff libbz2.1.0.dylib 1.0.5
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/System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService
0x7fffffe00000 - 0x7fffffe01fff libSystem.B.dylib ??? (???)
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Model: MacBookPro5,3, BootROM MBP53.00AC.B03, 2 processors, Intel Core 2
Duo, 2.8 GHz, 4 GB, SMC 1.48f2
Graphics: NVIDIA GeForce 9600M GT, NVIDIA GeForce 9600M GT, PCIe, 512 MB
Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D),
Broadcom BCM43xx 1.0 (5.10.131.42.4)
Bluetooth: Version 2.4.5f3, 2 service, 12 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: AirPort, AirPort, en1
Serial ATA Device: FUJITSU MJA2500BH FFS G1, 465.76 GB
Serial ATA Device: MATSHITADVD-R UJ-868
USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8507, 0x24400000 / 2
USB Device: Internal Memory Card Reader, 0x05ac (Apple Inc.), 0x8403,
0x26500000 / 2
USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.),
0x0236, 0x04600000 / 3
USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x04500000 / 2
USB Device: Optical USB Mouse, 0x046d (Logitech Inc.), 0xc016,
0x06200000 / 3
USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x06100000 / 2
USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8217,
0x06110000 / 4
========
On 11-07-22 3:03 PM, Edward d'Auvergne wrote:
Hi Seb,
I now have a Mac OS X machine I can test this out out. This type of
bug could actually be any GUI error, so greyed out menus or a
unresponsive GUI doesn't say much. When testing the GUI, it is best
to run relax using:
$ ./relax -gd
This will then leave STDOUT and STDERR output to the terminal from
where relax was launched, rather than sending the output to the relax
controller. Note I have also implemented the framework for GUI tests
and already have 3 tests which pass on my GNU/Linux machine. To use
this, type:
$ ./relax --gui-test
These tests are run as part of the full test suite as well, so:
$ ./relax -x
will test everything. I haven't looked at polishing or even debugging
the GUI on Mac OS X or MS Windows yet, as I'm still in the fundamental
redesign process. It is getting close though, and the new GUI design
is quite different. It should give the flexibility that users
require. And it should make it easy to add new analyses to the GUI
such as the consistency testing, the reduced spectral density mapping,
the N-state model, and the frame order theory (as well as a custom
analysis where the user is free to do what ever they like. It is also
quite easy to create user functions windows with the infrastructure
now built into this branch.
Regards,
Edward
P. S. If you work out how to fix something on a Mac yourself, that
information would be quite useful ;)
On 22 July 2011 13:39, Sébastien Morin<sebastien.morin@xxxxxxxxx> wrote:
Hi Edward,
I just updated my copy of the gui-testing branch and tried it under Mac OSX.
If choosing "File / New analysis" and going through the process, after
pressing "Finish", all menu times are gray and relax is unresponsive, as was
observed before (see bug https://gna.org/bugs/?18197).
This will prevent the use of relax under Mac OSX...
Cheers,
Séb :)
--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
Re: relax gui-testing branch