Hi again,
Quite funny. If the test is ran as part of "relax -s", then it does not
fail...
However, if running "./relax -s Relax_fit.check_curve_fitting", then a
failure arises...
Are we supposed to be able to run each test individually ?
Séb :)
On 11-08-25 4:45 PM, Sébastien Morin wrote:
Hi,
The problem I mentioned with the system test using
"Relax_fit.check_curve_fitting" is still present...
I will wait..!
Séb :)
On 11-08-25 1:03 PM, Edward d'Auvergne wrote:
Hi,
If you perform an svnmerge now, you should have most of the test suite
working. There is one failure in the system tests at the moment and
that is in the Mf.test_dauvergne_protocol test. The problem is that I
have added calls to pymol.write() to create PyMOL macros, but this
code does not exist yet. Michael Bieri coded the PyMOL macros
directly into the GUI code, but I am in the process of shifting it
into the relax back end as a user function. The GUI tests are also
failing for some unknown reason related to the multi-processor IO
redirection which I am still hunting down.
Regards,
Edward
On 25 August 2011 12:42, Sébastien Morin<sebastien.morin@xxxxxxxxx>
wrote:
Hi Ed,
Yeah, I had the impression it was your fault..! :p
Anyway, I am fixing other things at the moment.
Please let me know when this is fixed.
Cheers,
Séb :)
On 11-08-25 12:40 PM, Edward d'Auvergne wrote:
Hi,
I'm working on this at the moment. Unfortunately the main 1.3 line is
severely broken at the moment! The new multi-processor package is
clashing with and causing relax to die hard on the test-suite and the
GUI. The main cause is IO redirection of sys.stdout and sys.stderr.
The multi-processor code (even in uni-processor mode) is hijacking the
streams and the test suite and GUI do not know what to do anymore.
Once I eliminate all the IO redirection of the multi package, apart
from the IO capture on the slave processes which is non-functional
anyway, then the test-suite should be back in order. I noticed you
performed an svnmerge, and this is likely causing the breakages in
your branch.
Regards,
Edward
On 25 August 2011 12:23, Sébastien Morin<sebastien.morin@xxxxxxxxx>
wrote:
Hi Ed,
While working on "inversion-recovery" branch, I realized that the
system
tests "Relax_fit.check_curve_fitting__exp_2param_neg" and
"Relax_fit.check_curve_fitting__exp_3param_inv_neg" were failing. In
order
to pin point the problem, I checked on the main 1.3 branch (514439)
and
system test "Relax_fit.check_curve_fitting" also failed, with the same
error:
==========
======================================================================
ERROR: check_curve_fitting
(test_suite.system_tests.relax_fit.Relax_fit)
Check the results of the curve-fitting.
----------------------------------------------------------------------
relax> pipe.create(pipe_name='mf', pipe_type='mf')
Traceback (most recent call last):
File
"/Users/semor/Documents/pse-4/collaborations/relax/relax-1.3/test_suite/system_tests/relax_fit.py",
line 60, in check_curve_fitting
self.assertEqual(cdp.curve_type, 'exp')
AttributeError: 'PipeContainer' object has no attribute 'curve_type'
----------------------------------------------------------------------
Ran 1 test in 0.001s
FAILED (errors=1)
==========
I tried changing the pipe type from "mf" to "relax_fit" (as it should
be).
This did not solve the issue...
Any idea ?
Thanks !
Séb :)
--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
_______________________________________________
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Re: System test "Relax_fit.check_curve_fitting"