Re: r17456 - /trunk/docs/latex/consistency_tests.tex -- September 05, 2012 - 16:56

Sorry, I didn't realise we were in this patch of text!  Oh well, it's
easy to fix.

Regards,

Edward


On 5 September 2012 16:54, Sébastien Morin <sebastien.morin@xxxxxxxxx> wrote:
> Hi,
>
> I had this impression, but you seemed so convinced... :p
>
> Cheers,
>
> Séb  :)
>
>
>
> On 12-09-05 4:44 PM, Edward d'Auvergne wrote:
> > Hi,
> >
> > I just realised that this is the part where the sample script has been
> > reproduced.  Sorry, it would be better to not have the \citet
> > citations.  The maths should be removed as well.  This is supposed to
> > be a verbatim copy of the text of the script, so no fancy formatting.
> >
> > Regards,
> >
> > Edward
> >
> >
> > On 5 September 2012 14:49, Sébastien Morin <sebastien.morin@xxxxxxxxx>
> > wrote:
> > > HI,
> > >
> > > I just corrected this and more...
> > >
> > >
> > > Séb  :)
> > >
> > >
> > >
> > > On 12-09-05 2:36 PM, Edward d'Auvergne wrote:
> > > > Hi,
> > > >
> > > > I just noticed the reference "Morin \& Gagne (2009a) J. Biomol. NMR,
> > > > 45: 361-372" in that text!  Could you change it to
> > > > "\citet{MorinGagne09}" to fit into the bibtex system?
> > > >
> > > > Cheers,
> > > >
> > > > Edward
> > > >
> > > >
> > > > On 5 September 2012 14:25,  <sebastien.morin@xxxxxxxxx> wrote:
> > > > > Author: semor
> > > > > Date: Wed Sep  5 14:25:48 2012
> > > > > New Revision: 17456
> > > > >
> > > > > URL: http://svn.gna.org/viewcvs/relax?rev=17456&view=rev
> > > > > Log:
> > > > > Made some corrections to the formatting of math symbols in Latex.
> > > > >
> > > > >
> > > > > Modified:
> > > > >       trunk/docs/latex/consistency_tests.tex
> > > > >
> > > > > Modified: trunk/docs/latex/consistency_tests.tex
> > > > > URL:
> > > > >
> > > > > http://svn.gna.org/viewcvs/relax/trunk/docs/latex/consistency_tests.tex?rev=17456&r1=17455&r2=17456&view=diff
> > > > >
> > > > >
> > > > > ==============================================================================
> > > > > --- trunk/docs/latex/consistency_tests.tex (original)
> > > > > +++ trunk/docs/latex/consistency_tests.tex Wed Sep  5 14:25:48 2012
> > > > > @@ -64,7 +64,7 @@
> > > > >     \\
> > > > >    Severe artifacts can be introduced if model-free analysis is
> > > > > performed
> > > > > from inconsistent multiple magnetic field datasets. The use of simple
> > > > > tests
> > > > > as validation tools for the consistency assessment can help avoid such
> > > > > problems in order to extract more reliable information from spin
> > > > > relaxation
> > > > > experiments. In particular, these tests are useful for detecting
> > > > > inconsistencies arising from R2 data. Since such inconsistencies can
> > > > > yield
> > > > > artifactual Rex parameters within model-free analysis, these tests
> > > > > should be
> > > > > use routinely prior to any analysis such as model-free calculations. \\
> > > > >     \\
> > > > > -This script will allow one to calculate values for the three
> > > > > consistency
> > > > > tests J(0), F\_eta and F\_R2. Once this is done, qualitative analysis
> > > > > can be
> > > > > performed by comparing values obtained at different magnetic fields.
> > > > > Correlation plots and histograms are useful tools for such comparison,
> > > > > such
> > > > > as presented in Morin \& Gagne (2009a) J. Biomol. NMR, 45: 361-372. \\
> > > > > +This script will allow one to calculate values for the three
> > > > > consistency
> > > > > tests $J(0)$, $F\_eta$ and $F\_{R_2}$. Once this is done, qualitative
> > > > > analysis can be performed by comparing values obtained at different
> > > > > magnetic
> > > > > fields. Correlation plots and histograms are useful tools for such
> > > > > comparison, such as presented in Morin \& Gagne (2009a) J. Biomol. NMR,
> > > > > 45:
> > > > > 361-372. \\
> > > > >     \\
> > > > >     \\
> > > > >    References \\
> > > > > @@ -76,18 +76,18 @@
> > > > >     \\
> > > > >    The origins of the equations used in the approach: \\
> > > > >     \\
> > > > > -    J(0): \\
> > > > > +    $J(0)$: \\
> > > > >            Farrow et al. (1995) Spectral density function mapping using
> > > > > 15N relaxation data exclusively. J. Biomol. NMR, 6: 153-162.
> > > > > http://dx.doi.org/10.1007/BF00211779 \\
> > > > >     \\
> > > > > -    F\_eta: \\
> > > > > -        Fushman et al. (1998) Direct measurement of 15N chemical shift
> > > > > anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
> > > > > http://dx.doi.org/10.1021/ja981686m \\
> > > > > - \\
> > > > > -    F\_R2: \\
> > > > > -        Fushman et al. (1998) Direct measurement of 15N chemical shift
> > > > > anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
> > > > > http://dx.doi.org/10.1021/ja981686m \\
> > > > > +    $F\_eta$: \\
> > > > > +        Fushman et al. (1998) Direct measurement of $^{15}$N chemical
> > > > > shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
> > > > > http://dx.doi.org/10.1021/ja981686m \\
> > > > > + \\
> > > > > +    $F\_{R_2}$: \\
> > > > > +        Fushman et al. (1998) Direct measurement of $^{15}$N chemical
> > > > > shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952.
> > > > > http://dx.doi.org/10.1021/ja981686m \\
> > > > >     \\
> > > > >    A study where consistency tests were used: \\
> > > > >     \\
> > > > > -    Morin \& Gagne (2009) NMR dynamics of PSE-4 beta-lactamase: An
> > > > > interplay of ps-ns order and us-ms motions in the active site. Biophys.
> > > > > J.,
> > > > > 96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068  \\
> > > > > +    Morin \& Gagne (2009) NMR dynamics of PSE-4 $\beta$-lactamase: An
> > > > > interplay of ps-ns order and $\mu$s-ms motions in the active site.
> > > > > Biophys.
> > > > > J., 96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068  \\
> > > > >    """ \\
> > > > >     \\
> > > > >    \# Create the run. \\
> > > > >
> > > > >
> > > > > _______________________________________________
> > > > > relax (http://www.nmr-relax.com)
> > > > >
> > > > > This is the relax-commits mailing list
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> > > > _______________________________________________
> > > > relax (http://www.nmr-relax.com)
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> > >
> > > --
> > > Sébastien Morin, Ph.D.
> > > Postdoctoral Fellow, S. Bernèche Laboratory
> > > Department of Bioinformatics
> > > Biozentrum, Universität Basel
> > > Klingelbergstrasse 50/70
> > > 4056 Basel
> > > Switzerland
> > > ---- sebastien DOT morin AT unibas DOT ch ----
>
> --
> Sébastien Morin, Ph.D.
> Postdoctoral Fellow, S. Bernèche Laboratory
> Department of Bioinformatics
> Biozentrum, Universität Basel
> Klingelbergstrasse 50/70
> 4056 Basel
> Switzerland
> ---- sebastien DOT morin AT unibas DOT ch ----
>
>
> _______________________________________________
> relax (http://www.nmr-relax.com)
>
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