On 13 May 2013 19:54, Troels Emtekær Linnet <
tlinnet@xxxxxxxxx> wrote:
> I succeded with the 32 bit ! :-)
>
> --------------------------------
>
> C:\WinPython27\packages_32bit\relax_disp>scons
> scons: Reading SConscript files ...
> scons: done reading SConscript files.
> scons: Building targets ...
>
>
> ###########################
> # Compiling the C modules #
> ###########################
>
>
> Building the relaxation curve fitting module
> 'target_functions\\relax_fit.pyd'
>
> cl /Fotarget_functions\c_chi2.obj /c target_functions\c_chi2.c /nologo
> /I"C:\Win
> Python27\WinPython-32bit-2.7.4.1\python-2.7.4\include"
> c_chi2.c
> cl /Fotarget_functions\exponential.obj /c target_functions\exponential.c
> /nologo
> /I"C:\WinPython27\WinPython-32bit-2.7.4.1\python-2.7.4\include"
> exponential.c
> cl /Fotarget_functions\relax_fit.obj /c target_functions\relax_fit.c /nologo
> /I"
> C:\WinPython27\WinPython-32bit-2.7.4.1\python-2.7.4\include"
> relax_fit.c
> c:\winpython27\packages_32bit\relax_disp\target_functions\relax_fit.c(137) :
> war
> ning C4700: uninitialized local variable 'params' used
> link /nologo /dll /out:target_functions\relax_fit.pyd
> /implib:target_functions\r
> elax_fit.lib
> /LIBPATH:C:\WinPython27\WinPython-32bit-2.7.4.1\python-2.7.4\libs t
> arget_functions\c_chi2.obj target_functions\exponential.obj
> target_functions\rel
> ax_fit.obj
> Creating library target_functions\relax_fit.lib and object
> target_functions\r
> elax_fit.exp
> scons: done building targets.
>
> C:\WinPython27\packages_32bit\relax_disp>relax
>
>
>
> relax repository checkout r19681
> svn://
svn.gna.org/svn/relax/branches/relax_disp
>
> Molecular dynamics by NMR data analysis
>
> Copyright (C) 2001-2006 Edward d'Auvergne
> Copyright (C) 2006-2013 the relax development team
>
> This is free software which you are welcome to modify and redistribute under
> the conditions of the GNU General Public License (GPL). This program,
> including all modules, is licensed under the GPL and comes with absolutely
> no
> warranty. For details type 'GPL' within the relax prompt.
>
> Assistance in using the relax prompt and scripting interface can be accessed
> by
> typing 'help' within the prompt.
>
> Processor fabric: Uni-processor.
>
> relax>
>
>
> 2013/5/13 Troels Emtekær Linnet <
tlinnet@xxxxxxxxx>
>>
>> Hi Edward.
>>
>> Let's then do it with the winpython.
>>
http://code.google.com/p/winpython/
>>
>> It's free for all, and you can setup a "local" version of python.
>> I even like this distribution better than epd, since it is more "free".
>> (It just came to my attention, some days ago)
>> And you have the spyder gui packed in, ready for coding scientific in
>> windows.
>>
>> I downloaded the 64 bit.
>> I opened the Winpython control panel, in the extracted folder. See info
>> here:
http://code.google.com/p/winpython/wiki/WPPM
>> Downloaded and "Dragged" in minfx (as tar.gz), into the control panel to
>> install.
>> Downloaded scons 64 bit from Gohlke:
>>
http://www.lfd.uci.edu/~gohlke/pythonlibs/
>> Also dragged the .exe file into control panel to install.
>> Opened the short cut to windows command (fixes path issues), and tested
>> the call to scons. (where scons).
>> Fixed the scons bug thing in the python file.
>> After confirming it was using the right scons, I navigated to the
>> relax-disp folder.
>> Did a scons clean_all, and then scons
>>
>> Same issues last night.
>>
>> I will try the 32 bit version, a little later today.
>>
>> Best
>> Troels
>>
>> Troels Emtekær Linnet
>>
>>
>> 2013/5/13 Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
>>>
>>> Oh, one slight problem with EPD - I don't have a university email and
>>> do not work at a university. The Canopy Express version which is free
>>> does not support 64-bit. I might have a problem replicating this! Do
>>> you use 64-bit Windows 7 with the 64-bit EPD?
>>>
>>> Regards,
>>>
>>> Edward
>>>
>>>
>>>
>>> On 13 May 2013 15:06, Edward d'Auvergne <
edward@xxxxxxxxxxxxx> wrote:
>>> > Hi,
>>> >
>>> > Sorry I didn't see the attached file. It's better to copy and paste
>>> > such text directly in an email, or attach it to one of the relax
>>> > trackers (support request, bug tracker, or task tracker). For example
>>> > for relaxation dispersion there is the task at
>>> >
https://gna.org/task/?6401. In some cases it is better to create a
>>> > support request for just that specific file. Attaching files to
>>> > messages sent to mailing lists is not a good idea as the number of
>>> > copies of that attachment will be massively amplified and sent out to
>>> > all people on the mailing list. It is a strain on the open source
>>> > infrastructure of Gna! and on the infrastructure of the mailing list
>>> > archivers:
>>> >
>>> >
https://mail.gna.org/public/relax-devel/2013-05/msg00021.html
>>> >
http://thread.gmane.org/gmane.science.nmr.relax.devel/3835/focus=3854
>>> >
http://www.mail-archive.com/relax-devel@xxxxxxx/msg03785.html
>>> >
http://marc.info/?l=relax-devel&m=136844948831132&w=2
>>> >
>>> > I'll install EPD and see if I can reproduce the issue. To do that I
>>> > need to install exactly the same software and software versions.
>>> >
>>> > Cheers,
>>> >
>>> > Edward
>>> >
>>> >
>>> >
>>> > On 13 May 2013 14:50, Troels Emtekær Linnet <
tlinnet@xxxxxxxxx> wrote:
>>> >> Hi Edward.
>>> >>
>>> >> I have the EPD dist. installed. (Not the Canopy)
>>> >> (The detailed install instructions, I have specified in the attached
>>> >> text
>>> >> file.)
>>> >>
>>> >> I also tried with the winpython dist. yesterday, with the same result.
>>> >>
>>> >> I am about to try out the win32 distribution of these.
>>> >>
>>> >> Best
>>> >> Troels
>>> >>
>>> >> Troels Emtekær Linnet
>>> >>
>>> >>
>>> >> 2013/5/13 Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
>>> >>>
>>> >>> Hi Troels,
>>> >>>
>>> >>> I'm looking at replicating your setup in a virtual machine, but there
>>> >>> is one piece of information missing. Did you use Anaconda
>>> >>> (
http://continuum.io) or Enthought Python Distribution (EPD,
>>> >>>
https://www.enthought.com/canopy-express/) in combination with
>>> >>> IPython? This might be where the problem lies, one of these might
>>> >>> not
>>> >>> be compatible with compiling the C modules or may require settings to
>>> >>> be changes to allow it to run with the MSVS compilers.
>>> >>>
>>> >>> Cheers,
>>> >>>
>>> >>> Edward
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>> On 12 May 2013 21:21, Edward d'Auvergne <
edward@xxxxxxxxxxxxx> wrote:
>>> >>> > Hi,
>>> >>> >
>>> >>> > Maybe I could try to set up MSVS 2012 tomorrow in a virtual machine
>>> >>> > with
>>> >>> > 64-bit Win7 and see if I can reproduce the problem. It is clear
>>> >>> > that
>>> >>> > the
>>> >>> > relax sconstruct script is pointing to all the correct locations.
>>> >>> > If
>>> >>> > you
>>> >>> > type out the compiler commands by hand, they should just work.
>>> >>> > Therefore
>>> >>> > the problem is very unlikely to be with relax itself, but rather
>>> >>> > with
>>> >>> > the
>>> >>> > Microsoft 2012 C++ toolchain and/or its interaction with IPython.
>>> >>> > I'm
>>> >>> > wondering if it is a 64 vs. 32-bit mismatch issue. Do you have a
>>> >>> > 64-bit
>>> >>> > Windows install? Is the compiler toolchain (MSVS) 64-bit? Is the
>>> >>> > Python
>>> >>> > version bundled with IPython 64-bit? I really hope the issue is
>>> >>> > not
>>> >>> > because
>>> >>> > IPython is incompatible with MSVS! I think we are narrowing the
>>> >>> > problem
>>> >>> > down a bit and we should get to the bottom of it soon. For me
>>> >>> > replicating
>>> >>> > the issue, could you list the exact version and bit number of the
>>> >>> > operating
>>> >>> > system, MSVS, and IPython.
>>> >>> >
>>> >>> > Cheers,
>>> >>> >
>>> >>> > Edward
>>> >>> >
>>> >>> >
>>> >>> >
>>> >>> >
>>> >>> > On Sunday, 12 May 2013, Troels Emtekær Linnet wrote:
>>> >>> >>
>>> >>> >> Hi Edward.
>>> >>> >>
>>> >>> >> I have a the file
>>> >>> >> python27.lib
>>> >>> >> in C:\Python27\libs.
>>> >>> >>
>>> >>> >> I still don't have a clue whats wrong.
>>> >>> >> Could it be something with Visual C++ 2005 Express Edition?
>>> >>> >>
>>> >>> >> I am not sure the installation went correct, since when I do
>>> >>> >> Windows Start button->Microsoft Windows SDK v7.1->Visual Studio
>>> >>> >> Registration->Windows SDK Configuration Tool
>>> >>> >> Change "Installed Windows SDK Versions:" from v7.1 to 8.0
>>> >>> >> I get an error:
>>> >>> >> "Your system does not have Visual Studio 2005 or Visual Studio
>>> >>> >> 2008
>>> >>> >> installed"
>>> >>> >>
>>> >>> >> Best
>>> >>> >>
>>> >>> >> Troels Emtekær Linnet
>>> >>> >>
>>> >>> >>
>>> >>> >> 2013/5/11 Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
>>> >>> >>
>>> >>> >> Hi,
>>> >>> >>
>>> >>> >> We should be able to get to the bottom of the problem and make
>>> >>> >> this
>>> >>> >> run. But setting up the development platform on MS Windows of the
>>> >>> >> MSVS compiler and Python is always painful. Because of this I set
>>> >>> >> up
>>> >>> >> a virtual machine image of Windows 2000 with MSVS 2005 many years
>>> >>> >> ago
>>> >>> >> and have been using this to build the Windows pre-compiled relax
>>> >>> >> distributions (
http://www.nmr-relax.com/download.html#MS_Windows)
>>> >>> >> ever
>>> >>> >> since. I have updated Python to version 2.7 on this vm, but the
>>> >>> >> compiler setup works and I don't want to have to set up another
>>> >>> >> environment.
>>> >>> >>
>>> >>> >> From the error messages, it is clear that this 2012 version of the
>>> >>> >> Microsoft compiler catches more problems in the code. The
>>> >>> >> warning:
>>> >>> >>
>>> >>> >> c:\python27\github\relax_disp\target_functions\relax_fit.c(137) :
>>> >>> >> warning C4700: uninitialized local variable 'params' used
>>> >>> >>
>>> >>> >> may be an issue. I think this is harmless, but you could try to
>>> >>> >> comment out line 137 of that file (the call to the exponential()
>>> >>> >> function) and see if that makes a difference. This is inside the
>>> >>> >> dfunc() function which is both non-functional and not used. This
>>> >>> >> is
>>> >>> >> supposed to return the gradient of the exponential curve but is
>>> >>> >> not
>>> >>> >> implemented yet as simplex optimisation, which does not require
>>> >>> >> the
>>> >>> >> gradient or Hessian, was sufficient for finding the solution for
>>> >>> >> this
>>> >>> >> 2 parameter problem.
>>> >>> >>
>>> >>> >> From these new messages, it is clear that the Python.h file is
>>> >>> >> being
>>> >>> >> found. The include /I"C:\Python27\Scripts\..\include" is
>>> >>> >> interesting
>>> >>> >> as this implies that sys.prefix as seen by scons is set to
>>> >>> >> "C:\Python27\Scripts\..". Although strange, this may not be an
>>> >>> >> issue.
>>> >>> >> But when you run Python, you see sys.prefix as "C:\Python27".
>>> >>> >> Hmmmm.....
>>> >>> >>
>>> >>> >> Maybe the problem is not that Python.h cannot be found, but that
>>> >>> >> the
>>> >>> >> python32.lib file cannot be found. Can you see this file in your
>>> >>> >> C:\Python27\libs\ directory? You can see that this is used in the
>>> >>> >> linking command:
>>> >>> >>
>>> >>> >> link /nologo /dll /out:target_functions\relax_fit.pyd
>>> >>> >> /implib:target_functions\relax_fit.lib /LIBPATH:C:\Python27\libs
>>> >>> >> target_functions\c_chi2.obj target_functions\exponential.obj
>>> >>> >> target_functions\relax_fit.obj
>>> >>> >>
>>> >>> >> On Windows, there should be a python32.lib file in the LIBPATH.
>>> >>> >>
>>> >>> >> Regards,
>>> >>> >>
>>> >>> >> Edward
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >>
>>> >>> >> On 11 May 2013 12:41, Troels Emtekær Linnet <
tlinnet@xxxxxxxxx>
>>> >>> >> wrote:
>>> >>> >> > Hi Edward.
>>> >>> >> >
>>> >>> >> > Sigh.
>>> >>> >> >
>>> >>> >> > I have looked around for
>>> >>> >> > "error LNK2019: unresolved external symbol"
>>> >>> >> > and it seems that many experience the problem.
>>> >>> >> >
>>> >>> >> > But there don't seem to be an universal explanation/bug fix.
>>> >>> >> > And if I find a thing I would like to try, I really don't know
>>> >>> >> > where
>>> >>> >> > to
>>> >>> >> > start. ? :-)
>>> >>> >> >
>>> >>> >> > - "In Visual-Studio most linkage problems are related to forget
>>> >>> >> > adding
>>> >>> >> > .cpp
>>> >>> >> > files."
>>> >>> >> > - Url 2, Url3, Url4, Url5, Url6
>>> >>> >> >
>>> >>> >> > In the last Url, there is this solution:
>>> >>> >> > ---
>>> >>> >> > in the Project properties, set the Platform Toolset to VS2008
>>> >>> >> > (v90)
>>> >>> >> > and
>>> >>> >> > the
>>> >>> >> > correct directories depending on your installation (ie : include
>>> >>> >> > =>
>>> >>> >> > C:\Program Files (x86)\Windows
>>> >>> >> > Kits\8.0\Include\shared;C:\Program
>>> >>> >> > Files
>>> >>> >> > (x86)\Windows Kits\8.0\Include\um;$(IncludePath) and Libraries
>>> >>> >> > =>
>>> >>> >> > C:\Program
>>> >>> >> > Files (x86)\Windows Kits\8.0\Lib\win8\um\x64;$(LibraryPath)).
>>> >>> >> > Don't
>>> >>> >> > forget
>>> >>> >> > to set the .lib in Link entries.
>>> >>> >> > ---
>>> >>> >> >
>>> >>> >> > After installation of Visual Studio 2012, I do have the folder:
>>> >>> >> > C:\Program Files (x86)\Windows Kits\8.0
>>> >>> >> >
>>> >>> >> > I have attached a text file, how I have installed until now.
>>> >>> >> >
>>> >>> >> > I hope we can break this "annoying behaviour?"
>>> >>> >> > Where should I look, if .ccp files is added ??
>>> >>> >> >
>>> >>> >> > Best
>>> >>> >> > Troels
>>> >>> >> > ------------------------
>>> >>> >> >
>>> >>> >> > C:\Python27\github\relax_disp>scons clean_all
>>> >>> >> > scons: Reading SConscript files ...
>>> >>> >> > scons: done reading SConscript files.
>>> >>> >> > scons: Building targets ...
>>> >>> >> > clean_manual_files(["manual_clean"], [])
>>> >>> >> >
>>> >>> >> > ##########################################
>>> >>> >> > # Cleaning up the temporary manual files #
>>> >>> >> > ##########################################
>>> >>> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>> >> >
>>> >>
>>> >>
>>
>>
>