Re: Renaming of the numeric dispersion models.Re: Renaming of the numeric dispersion models.Hi, These names can clearly be better defined. They are fully explained in the relax manual for the dispersion branch (an older version is at http://download.gna.org/relax/manual/relax_disp_manual.pdf if you cannot compile the LaTeX manual). You can see additional descriptions via the user function. Type 'help(relax_disp.select_model)' in the prompt, or in the GUI click on 'User functions->relax_disp->select_model'. The acronyms or codes I have used are: - NS = numeric solution. - star = the model which uses the complex conjugate matrix (the complex conjugate symbol is a star). - 3D = the model which uses the 3D magnetization vectors, or the 7D matrix. - expanded = Skrynikov's Maple expansion of the 2D matrix. Your feedback to the naming as well as the model descriptions in the dispersion chapter of the manual and the in the user function is most welcome. I am trying to keep the model names as simple as possible but remaining fully descriptive. The analytic models are easy because I am simply using the author names and year in a clear code system. But the numeric models don't fit into this system. Note that the descriptions in the manual can be hugely improved. Cheers, Edward On 30 August 2013 09:40, Paul Schanda <paul.schanda@xxxxxx> wrote:
Hi Edward, Getting a system into these different models is certainly a good idea. Could you please explain the naming convention? NS is numerical solution, expanded is Nikolai's Maple derivation, I guess full means that both states are detected; but what is the rationale for "star"? You want to refer to the complex numbers? What about "2D" in this case? paul On 30.08.13 09:30, Edward d'Auvergne wrote:Hello, I have the following proposal for renaming the numeric dispersion models in relax. The reason for this is because I am adding the R1rho numeric model from the Skrynikov & Tollinger code (the sim_all.tar file https://gna.org/support/download.php?file_id=18404 attached to https://gna.org/task/?7712#comment5). So I propose the model names: 'NS CPMG 2-site 3D', 'NS CPMG 2-site 3D full', 'NS CPMG 2-site star', 'NS CPMG 2-site star full', 'NS CPMG 2-site expanded'. The new model will be: 'NS R1rho 2-site'. This R1rho model name will change in the future as more numeric R1rho dispersion models are added. Regards, Edward-- Paul Schanda, Ph.D. Biomolecular NMR group Institut de Biologie Structurale Jean-Pierre Ebel (IBS) 41, rue Jules Horowitz F-38027 Grenoble France +33 438 78 95 55 paul.schanda@xxxxxx http://www.ibs.fr/groups/biomolecular-nmr-spectroscopy?lang=en