Hi Edward,
I hope you have some time to take a look at this. I have a data set at two
fields. I used relax for fitting the data, but when and run the
full_analysis script, after the software starts the grid search I get the
following error message
Traceback (most recent call last):
File "/soft/group/relax/relax-1.3.4/relax", line 418, in ?
Relax()
File "/soft/group/relax/relax-1.3.4/relax", line 127, in __init__
self.interpreter.run(self.script_file)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 276, in
run
return run_script(intro=self.__intro_string, local=self.local,
script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 537, in
run_script
return console.interact(intro, local, script_file, quit,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 433, in
interact_script
execfile(script_file, local)
File "full_analysis_markup.py", line 764, in ?
Main(self.relax)
File "full_analysis_markup.py", line 226, in __init__
self.multi_model(local_tm=True)
File "full_analysis_markup.py", line 755, in multi_model
grid_search(inc=GRID_INC)
File "/soft/group/relax/relax-1.3.4/prompt/minimisation.py", line 156, in
grid_search
minimise.grid_search(lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity)
File "/soft/group/relax/relax-1.3.4/generic_fns/minimise.py", line 191, in
grid_search
grid_search(lower=lower, upper=upper, inc=inc, constraints=constraints,
verbosity=verbosity)
File
"/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py",
line 479, in grid_search
self.minimise(min_algor='grid', lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity, sim_index=sim_index)
File
"/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py",
line 789, in minimise
model_type = self.determine_model_type()
File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/main.py", line
1015, in determine_model_type
if cdp.diff_tensor.fixed:
AttributeError: 'PipeContainer' object has no attribute 'diff_tensor'
Checking the mailing archive I saw that Tiago Pais got the same error
message last year.
That time you suggested him to use a script containing a markup:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup
(
The complete answer was:
Re: Error when running full_analysis.py script
Edward d'Auvergne
Tue, 27 Oct 2009 03:02:16 -0700
Dear Tiago,
This is a hard one to catch. I have just added a function to this
script to check the validity of the user variables
(http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup).
This should give better error messages specifically identifying the
problem. For this second issue you are having, it is a little hard to
see what the problem is. Would you be able to supply a little more
information. For example the version of relax you are using, the full
error message, how you have executed the full_analysis.py script and
at what stage you are up to, etc. With more information, I should be
able to track down the issue.
Cheers,
Edward
)
The traceback I showed to you above is coming from running that script, I
got the same error message when I run the canonical full_analysis script.
I'm running relax 1.3.4 in RHEL distribution 5.1.19.6, kernel /vmlinuz
2.6.18-128.1.10.e15
It will be nice if you can help me with this
Best regards
Daniel
Dr. Daniel Pérez
Institut für Molekularbiologie und Biophysik
Schafmattstrasse 20
ETH-Hönggerberg, HPK G 5
CH-8093 Zürich
Phone: +41 44 633 25 37
E-mail: daniel.perez@xxxxxxxxxxxxxxxx
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Re: Error when running full_analysis.y script -- part II