| Hi Edward,
thanks for your quick answer.
I download the latest of relax 1.3 using
$ svn co svn://svn.gna.org/svn/relax/1.3 relax-1.3
Now when I run full_analysis.py with it I get the following error message
Traceback (most recent call last): File "/soft/group/relax/relax-1.3/relax", line 358, in ? Relax() File "/soft/group/relax/relax-1.3/relax", line 126, in __init__ self.interpreter.run(self.script_file) File "/soft/group/relax/relax-1.3/prompt/interpreter.py", line 287, in run return run_script(intro=self.__intro_string, local=locals(), script_file=script_file, quit=self.__quit_flag, show_script=self.__show_script, raise_relax_error=self.__raise_relax_error) File "/soft/group/relax/relax-1.3/prompt/interpreter.py", line 533, in run_script return console.interact(intro, local, script_file, quit, show_script=show_script, raise_relax_error=raise_relax_error) File "/soft/group/relax/relax-1.3/prompt/interpreter.py", line 429, in interact_script execfile(script_file, local) File "full_analysis.py", line 674, in ? Main(self.relax) AttributeError: Interpreter instance has no attribute 'relax'
It looks like a pretty basic error, but still I'm stacked with it
Regards
Daniel
Dr. Daniel Pérez Institut für Molekularbiologie und Biophysik Schafmattstrasse 20 ETH-Hönggerberg, HPK G 5 CH-8093 Zürich Phone: +41 44 633 25 37
Dr. Daniel Pérez Institut für Molekularbiologie und Biophysik Schafmattstrasse 20 ETH-Hönggerberg, HPK G 5 CH-8093 Zürich Phone: +41 44 633 25 37
On Mar 17, 2010, at 9:58 AM, Edward d'Auvergne wrote: Hi Daniel, This is actually a bug that was fixed a while ago ( http://gna.org/bugs/?15050). I have to release relax-1.3.5 soon as there are many bug fixes in the repository sitting there waiting. If you can't wait, you can obtain the new code by following the instructions in one of the following: https://mail.gna.org/public/relax-users/2008-09/msg00002.htmlhttps://mail.gna.org/public/relax-users/2008-10/msg00013.html https://mail.gna.org/public/relax-users/2006-11/msg00006.html All the links are to help with Google indexing, just like this http://www.nmr-relax.com/ ;) The first should be enough, but the others might give more info if you need it. Regards, Edward 2010/3/17 Daniel Pérez <daniel.perez@xxxxxxxxxxxxxxxx>: Hi Edward,
I hope you have some time to take a look at this. I have a data set at two fields. I used relax for fitting the data, but when and run the full_analysis script, after the software starts the grid search I get the following error message
Traceback (most recent call last):
File "/soft/group/relax/relax-1.3.4/relax", line 418, in ?
Relax()
File "/soft/group/relax/relax-1.3.4/relax", line 127, in __init__
self.interpreter.run(self.script_file)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 276, in run
return run_script(intro=self.__intro_string, local=self.local, script_file=script_file, quit=self.__quit_flag, show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 537, in run_script
return console.interact(intro, local, script_file, quit, show_script=show_script, raise_relax_error=raise_relax_error)
File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 433, in interact_script
execfile(script_file, local)
File "full_analysis_markup.py", line 764, in ?
Main(self.relax)
File "full_analysis_markup.py", line 226, in __init__
self.multi_model(local_tm=True)
File "full_analysis_markup.py", line 755, in multi_model
grid_search(inc=GRID_INC)
File "/soft/group/relax/relax-1.3.4/prompt/minimisation.py", line 156, in grid_search
minimise.grid_search(lower=lower, upper=upper, inc=inc, constraints=constraints, verbosity=verbosity)
File "/soft/group/relax/relax-1.3.4/generic_fns/minimise.py", line 191, in grid_search
grid_search(lower=lower, upper=upper, inc=inc, constraints=constraints, verbosity=verbosity)
File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py", line 479, in grid_search
self.minimise(min_algor='grid', lower=lower, upper=upper, inc=inc, constraints=constraints, verbosity=verbosity, sim_index=sim_index)
File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py", line 789, in minimise
model_type = self.determine_model_type()
File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/main.py", line 1015, in determine_model_type
if cdp.diff_tensor.fixed:
AttributeError: 'PipeContainer' object has no attribute 'diff_tensor'
Checking the mailing archive I saw that Tiago Pais got the same error message last year.
That time you suggested him to use a script containing a markup:
http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup
(
The complete answer was:
Re: Error when running full_analysis.py script
Edward d'Auvergne
Tue, 27 Oct 2009 03:02:16 -0700
Dear Tiago,
This is a hard one to catch. I have just added a function to this
script to check the validity of the user variables
(http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup).
This should give better error messages specifically identifying the
problem. For this second issue you are having, it is a little hard to
see what the problem is. Would you be able to supply a little more
information. For example the version of relax you are using, the full
error message, how you have executed the full_analysis.py script and
at what stage you are up to, etc. With more information, I should be
able to track down the issue.
Cheers,
Edward
)
The traceback I showed to you above is coming from running that script, I got the same error message when I run the canonical full_analysis script.
I'm running relax 1.3.4 in RHEL distribution 5.1.19.6, kernel /vmlinuz 2.6.18-128.1.10.e15
It will be nice if you can help me with this
Best regards
Daniel
Dr. Daniel Pérez
Institut für Molekularbiologie und Biophysik
Schafmattstrasse 20
ETH-Hönggerberg, HPK G 5
CH-8093 Zürich
Phone: +41 44 633 25 37
E-mail: daniel.perez@xxxxxxxxxxxxxxxx
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Re: Error when running full_analysis.y script -- part II