On 9 August 2012 17:15, Venkat V <
venkat@xxxxxxxxxxxxxxxxxxx> wrote:
> Hi Edward,
>
> Here is the o/p of the wx tests.
>
> $ which python
> /programs/x86_64-linux/python/2.7.2/bin/python
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
> $ python run.py Ge
> GenericButtons.py GenericDirCtrl.py GetMouseState.py
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
> $ python run.py Gene
> GenericButtons.py GenericDirCtrl.py
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
> $ python run.py GenericButtons.py
> Python 2.7.2 (default, Oct 27 2011, 16:10:58)
> [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)]
> wx.version: 2.8.12.1 (gtk2-unicode)
> pid: 32382
> Traceback (most recent call last):
> File "run.py", line 162, in <module>
> main(sys.argv)
> File "run.py", line 156, in main
> app = RunDemoApp(name, module, useShell)
> File "run.py", line 50, in __init__
> wx.App.__init__(self, redirect=False)
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7981, in __init__
> self._BootstrapApp()
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7555, in _BootstrapApp
> return _core_.PyApp__BootstrapApp(*args, **kwargs)
> File "run.py", line 57, in OnInit
> self.InitInspection() # for the InspectionMixin base class
> AttributeError: 'RunDemoApp' object has no attribute 'InitInspection'
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
> $ python run.py StaticBitmap.py
> Python 2.7.2 (default, Oct 27 2011, 16:10:58)
> [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)]
> wx.version: 2.8.12.1 (gtk2-unicode)
> pid: 32429
> Traceback (most recent call last):
> File "run.py", line 162, in <module>
> main(sys.argv)
> File "run.py", line 156, in main
> app = RunDemoApp(name, module, useShell)
> File "run.py", line 50, in __init__
> wx.App.__init__(self, redirect=False)
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7981, in __init__
> self._BootstrapApp()
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7555, in _BootstrapApp
> return _core_.PyApp__BootstrapApp(*args, **kwargs)
> File "run.py", line 57, in OnInit
> self.InitInspection() # for the InspectionMixin base class
> AttributeError: 'RunDemoApp' object has no attribute 'InitInspection'
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
> $ python run.py ComboCtrl.py
> Python 2.7.2 (default, Oct 27 2011, 16:10:58)
> [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)]
> wx.version: 2.8.12.1 (gtk2-unicode)
> pid: 32476
> Traceback (most recent call last):
> File "run.py", line 162, in <module>
> main(sys.argv)
> File "run.py", line 156, in main
> app = RunDemoApp(name, module, useShell)
> File "run.py", line 50, in __init__
> wx.App.__init__(self, redirect=False)
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7981, in __init__
> self._BootstrapApp()
> File
> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py",
> line 7555, in _BootstrapApp
> return _core_.PyApp__BootstrapApp(*args, **kwargs)
> File "run.py", line 57, in OnInit
> self.InitInspection() # for the InspectionMixin base class
> AttributeError: 'RunDemoApp' object has no attribute 'InitInspection'
> sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo
>
>
> sincerely,
>
> Venkat
>
> On Thu, Aug 9, 2012 at 1:40 AM, Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
> wrote:
>>
>> Hi,
>>
>> Do you have the wx demos? You can download them from
>>
http://downloads.sourceforge.net/wxpython/wxPython-demo-2.8.12.1.tar.bz2
>> and run these directly. The results of the following tests are
>> important:
>>
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py GenericButtons.py
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py StaticBitmap.py
>> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py ComboCtrl.py
>>
>> As you have compiled this version of wxPython and it seems to be
>> broken, I would recommend downloading the latest 2.9.4.0 version and
>> trying that. I have extensively tested with 2.9.3.1 and everything
>> works very nicely, and the Mac OS X distribution dmg file has this
>> version built in. Note that the 2.9 versions are much simpler to
>> compile and install. The 2.8 version I have tested is 2.8.11.0,
>> therefore I would suggest that wxPython has introduced a bug between
>> 2.8.11.0 and 2.8.12.1.
>>
>> Regards,
>>
>> Edward
>>
>>
>> P. S. If the 2.9 versions work, the report from the wxPython 2.8
>> demos would still be very useful for any other relax users who
>> encounter the same problem.
>>
>>
>>
>> On 8 August 2012 21:11, Venkat V <
venkat@xxxxxxxxxxxxxxxxxxx> wrote:
>> > Hi ,
>> >
>> > Here is how wx-python was installed.
>> >
>> > ./configure --prefix=/programs/x86_64-linux/wxpython/
2.8.12.1
>> > --enable-unicode --with-gtk --with-gnomeprint --with-opengl
>> > --with-libjpeg=builtin --with-libpng=builtin --with-libtiff=builtin
>> > --with-zlib=builtin --enable-optimize --enable-debug_flag
>> > --enable-rpath=/programs/x86_64-linux/wxpython/
2.8.12.1/lib
>> > make && make install
>> > cd contrib
>> > make && make install
>> > cd ../wxPython
>> > export PATH=programs/system/x86_64-linux/wxpython/
2.8.12.1/bin:$PATH
>> > python setup.py install
>> >
>> >
>> > Output of relax --info
>> >
>> > relax --info
>> >
>> >
>> >
>> > relax 2.1.0
>> >
>> > Molecular dynamics by NMR data analysis
>> >
>> > Copyright (C) 2001-2006 Edward d'Auvergne
>> > Copyright (C) 2006-2012 the relax development
>> > team
>> >
>> > This is free software which you are welcome to modify and redistribute
>> > under
>> > the conditions of the
>> > GNU General Public License (GPL). This program, including all modules,
>> > is
>> > licensed under the GPL
>> > and comes with absolutely no warranty. For details type 'GPL' within
>> > the
>> > relax prompt.
>> >
>> > Assistance in using the relax prompt and scripting interface can be
>> > accessed
>> > by typing 'help' within
>> > the prompt.
>> >
>> > Processor fabric: Uni-processor.
>> >
>> >
>> > Hardware information:
>> > Machine: x86_64
>> > Processor: x86_64
>> > Endianness: little
>> > Total RAM size: 2011 Mb
>> > Total swap size: 509 Mb
>> >
>> > Operating system information:
>> > System: Linux
>> > Release: 2.6.18-194.17.1.el5
>> > Version: #1 SMP Wed Sep 29 12:50:31 EDT 2010
>> > GNU/Linux version: CentOS 5.8 Final
>> > Distribution: redhat 5.8 Final
>> > Full platform string:
>> > Linux-2.6.18-194.17.1.el5-x86_64-with-redhat-5.8-Final
>> >
>> > Python information:
>> > Architecture: 64bit ELF
>> > Python version: 2.7.2
>> > Python branch:
>> > Python build: default, Oct 27 2011 16:10:58
>> > Python compiler: GCC 4.1.2 20080704 (Red Hat 4.1.2-51)
>> > Libc version: glibc 2.2.5
>> > Python implementation: CPython
>> > Python revision:
>> > Python executable:
>> > /programs/x86_64-linux/python/2.7.2/bin/python
>> > Python flags: sys.flags(debug=0, py3k_warning=0,
>> > division_warning=0, division_new=0, inspect=0, interactive=0,
>> > optimize=0,
>> > dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0,
>> > tabcheck=0, verbose=0, unicode=0, bytes_warning=0)
>> > Python float info: sys.float_info(max=1.7976931348623157e+308,
>> > max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308,
>> > min_exp=-1021,
>> > min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16,
>> > radix=2, rounds=1)
>> > Python module path: ['/programs/x86_64-linux/relax/2.1.0',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/pip-1.0.2-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/matplotlib-1.1.0-py2.7-linux-x86_64.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/yolk-0.4.1-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MySQL_python-1.2.3-py2.7-linux-x86_64.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/VTK-5.6.1-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysis-0.7.5.1-py2.7-linux-x86_64.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/GridDataFormats-0.2.2-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/networkx-1.6-py2.7.egg',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysisTests-0.7.5.1-py2.7.egg',
>> > '/programs/x86_64-linux/ccp4/6.2.0/ccp4-6.2.0/share/python',
>> > '/programs/x86_64-linux/ccpnmr/2.2.1/ccpnmr2.2/python',
>> > '/programs/x86_64-linux/csrosetta/20120626/python',
>> > '/programs/x86_64-linux/eman/1.9/lib',
>> > '/programs/x86_64-linux/eman2/20120806/lib',
>> > '/programs/x86_64-linux/eman2/20120806/bin',
>> > '/programs/x86_64-linux/haddock/2.1',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python27.zip',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/plat-linux2',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-tk',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-old',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/PIL',
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages',
>> >
>> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode',
>> > '/programs/x86_64-linux/relax/2.1.0/extern/scientific_python/linux2']
>> >
>> > Python packages and modules (most are optional):
>> >
>> > Name Installed Version Path
>> > minfx True Unknown
>> > /programs/x86_64-linux/relax/2.1.0/minfx
>> > bmrblib True Unknown
>> > /programs/x86_64-linux/relax/2.1.0/bmrblib
>> > numpy True 1.6.1
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/numpy
>> > scipy True 0.10.0
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/scipy
>> > wxPython True 2.8.12.1 (gtk2-unicode)
>> >
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx
>> > mpi4py False
>> > epydoc False
>> > optparse True 1.5.3
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/optparse.pyc
>> > readline True
>> >
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/readline.so
>> > profile True
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/profile.pyc
>> > bz2 True
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/bz2.so
>> > gzip True
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/gzip.pyc
>> > os.devnull True
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/os.pyc
>> > xml True 0.8.4 (internal)
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/__init__.pyc
>> > xml.dom.minidom True
>> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/dom/minidom.pyc
>> >
>> > relax information:
>> > Version: 2.1.0
>> > Processor fabric: Uni-processor.
>> >
>> > relax C modules:
>> >
>> > Module Compiled File type
>> > Path
>> > maths_fns.relax_fit True ELF 64-bit LSB shared object, AMD
>> > x86-64,
>> > version 1 (SYSV), not stripped
>> > /programs/x86_64-linux/relax/2.1.0/maths_fns/relax_fit.so
>> >
>> >
>> > Will get the wx_python o/p by tomorrow
>> >
>> > venkat
>> >
>> > On Wed, Aug 8, 2012 at 5:09 PM, Edward d'Auvergne <
edward@xxxxxxxxxxxxx>
>> > wrote:
>> >>
>> >> Hi Venkat,
>> >>
>> >> I have seen the log file attached to your bug report
>> >> (
https://gna.org/bugs/?19987). There seems to be two separate issues
>> >> here. The first is the two failures in the system tests. As you can
>> >> probably see, this is for Art Palmer's Modelfree4 program. From the
>> >> lower precision of the chi-squared values from your installed version,
>> >> I would assume that you have a version much older than the current
>> >> (though still very old) 4.20 version which includes a number of
>> >> patches I sent to Art to fix bugs and to compile with GCC
>> >>
>> >> (
http://biochemistry.hs.columbia.edu/labs/palmer/software/modelfree.html).
>> >> You can ignore these two failures.
>> >>
>> >> The second problem is in the GUI tests. I think these messages
>> >> clearly identify the problem. The important error message is the very
>> >> first:
>> >>
>> >> Traceback (most recent call last):
>> >> File
>> >>
>> >> "/programs/x86_64-linux/relax/2.1.0/test_suite/gui_tests/base_classes.py",
>> >> line 198, in setUp
>> >> self.app.gui = Main(parent=None, id=-1, title="")
>> >> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line
>> >> 162, in __init__
>> >> self.add_start_screen()
>> >> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line
>> >> 259, in add_start_screen
>> >> image = wx.StaticBitmap(self, -1,
>> >> bitmap_setup(paths.IMAGE_PATH+'ulysses_shadowless_400x168.png'))
>> >> File "/programs/x86_64-linux/relax/2.1.0/gui/misc.py", line 133, in
>> >> bitmap_setup
>> >> bitmap.SetMaskColour(None)
>> >> File
>> >>
>> >> "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_gdi.py",
>> >> line 632, in SetMaskColour
>> >> return _gdi_.Bitmap_SetMaskColour(*args, **kwargs)
>> >> PyAssertionError: C++ assertion "Ok()" failed at
>> >> ./src/gtk/colour.cpp(146) in Blue(): invalid colour
>> >>
>> >> The second is just an error caused by the failure of the first test -
>> >> nothing to worry about. You can then see that these two error
>> >> messages are alternatively repeated for all the GUI tests. The key is
>> >> the failure of the setting of the mask
>> >> (
http://en.wikipedia.org/wiki/Mask_%28computing%29#Image_masks) for
>> >> the bitmap image. This clearly indicates that your wxPython install
>> >> is broken (for your sys admin - I'm guessing because of the linking to
>> >> the GTK+ libraries). You might be able to test this with the wxPython
>> >> demos for this wxPython version. Try the following and see if you
>> >> observe error messages:
>> >>
>> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py
>> >> GenericButtons.py
>> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py StaticBitmap.py
>> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py ComboCtrl.py
>> >>
>> >> These should all run fine. Note you need to be in the wx_demo
>> >> directory containing the run.py and other files. Could you copy and
>> >> paste the output of these tests. Also, I just noticed that your
>> >> information from:
>> >>
>> >> $ relax --info
>> >>
>> >> was accidentally not sent to the mailing lists. Could you copy and
>> >> paste that output as well for reference. Remember to click on
>> >> 'reply-to-all' rather than just 'reply' when responding. Other
>> >> information that would be useful is how is this wxPython installed?
>> >> Is it installed from the package management system, is it downloaded
>> >> binaries, or is it self compiled? Is it also installed locally or on
>> >> an NFS share, for example?
>> >>
>> >> Cheers,
>> >>
>> >> Edward
>> >>
>> >>
>> >> P.S. To summarize, here is a check list of needed information:
>> >>
>> >> 1. wx_demo tests output.
>> >> 2. relax --info output.
>> >> 3. wxPython install info.
>> >>
>> >>
>> >>
>> >> On 8 August 2012 13:07, venkataraman <
venkat@xxxxxxxxxxxxxxxxxxx>
>> >> wrote:
>> >> > I had sent the error report as a text file for the o/p of
>> >> > relax --test-suite on x86_64-linux on centOS5.
>> >> >
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > relax (
http://www.nmr-relax.com)
>> >> >
>> >> > This is the relax-users mailing list
>> >> >
relax-users@xxxxxxx
>> >> >
>> >> > To unsubscribe from this list, get a password
>> >> > reminder, or change your subscription options,
>> >> > visit the list information page at
>> >> >
https://mail.gna.org/listinfo/relax-users
>> >
>> >
>
>
Re: relax GUI