Hi Edward,
Thanks for the suggestions and informations. I could run
the program and get the local_tm whereas other models are still running.
I have few questions to ask,
(1) I am running this program on macpro
computer with i7 processor and 4 Gb run. When the program is running in
GUI mode, it slows down the computer. is it normal or is there a way to
make it faster without slowing down the computer?
(2) My protein is 152 amino acid long. it seems the program is running
for last few days and many more models to complete. Usually how long
does it take to complete a full automated run?
(3) what are
differences between local_tm models and model-free models? What i could
see is that local-tm models have tm with it whereas model-free models
dont!
(4) I want to see the results of local_tm run which seems to be over
with aic and tm0-tm9 folders created having results.bz2 in it? How to
check the results, for example, i want to see the overall correlation
time of my protein, how to see the results.bz2 file and which folder to
check? How to look for other parameters?
Since, i am trying use relax for 1st time, these questions might be
naive of its kind. Sorry for any inconvenience and looking forward to
hear from your side.
regards
ravi
On Thu, Oct 18, 2012 at 12:11 PM, Edward d'Auvergne
<edward@xxxxxxxxxxxxx> wrote:
Dear Ravi,
Welcome to the relax mailing lists! You should be able to find
answers to most of your questions in the relax user manual. This is
the relax.pdf file which is distributed with all versions of relax and
is located in the 'docs' directory. Alternatively you can see the
most up to date manual (currently relax version 2.1.2 which was
released yesterday) online at:
http://www.nmr-relax.com/manual/index.html
or in PDF form at:
http://download.gna.org/relax/manual/relax.pdf
In the manual you will find tutorials for all three user interfaces
(UI) including the prompt mode
(http://www.nmr-relax.com/manual/prompt.html), script mode
(http://www.nmr-relax.com/manual/Scripting.html), and the graphical
mode (GUI, http://www.nmr-relax.com/manual/GUI.html). The tutorials
cover how to calculate the NOE and its error
(http://www.nmr-relax.com/manual/Calculating_NOE.html), the relaxation
curve-fitting for finding the R1 and R2 relaxation rates
(http://www.nmr-relax.com/manual/Relaxation_curve_fitting.html), and
how to perform a full model-free analysis using one of the modern
analysis protocols
(http://www.nmr-relax.com/manual/Model_free_analysis.html). You will
also find other chapters for checking the consistency of your
relaxation data
(http://www.nmr-relax.com/manual/Consistency_testing.html) and how to
perform reduced spectral density mapping
(http://www.nmr-relax.com/manual/Reduced_spectral_density_mapping.html).
I have to warn you though, the manual is quite extensive and
complete, consisting of over 400 pages of incredibly detailed
information. I'm sure you will be able to find all the details you
will require or at least be pointed to the best literature references.
Regards,
Edward
On 18 October 2012 19:58, Ravi Pratap Barnwal <
ravi13pb@xxxxxxxxx> wrote:
> Hi,
>
> I am going to use 1st time user for model-free analysis of my protein and
> complex. I have calculated T1/2 and nOes at two different field and would
> like to use relax to get the all model-free parameters including overall
> tumbling time. Is there tutorial to follow for the same? what kind of input
> files do we need to start with?
>
> Any help will be highly appreciated.
>
> regards
> ravi
>
>
>
> relax (http://www.nmr-relax.com)
>
> This is the relax-users mailing list
> relax-users@xxxxxxx
>
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Re: relax use