Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

add() (in Sequence)	all() (in Unselect)	arguments() (in Relax)
add() (in Sequence)	angles (in generic_fns)	assemble_param_names() (in Model_free)
add_item() (in ResidueList)	Angles (in generic_fns.angles)	assemble_param_vector() (in Model_free)
add_item() (in SpecificData)	angles (in prompt)	assemble_scaling_matrix() (in Model_free)
add_list() (in Residue)	Angles (in prompt.angles)	assign_function() (in Noe)
add_residue() (in Rx_data)	angles() (in Angles)	axial() (in Angles)
aic() (in Model_selection)	angles() (in Angles)	axial() (in Diffusion_tensor)
aicc() (in Model_selection)	anisotropic() (in Diffusion_tensor)
all() (in Select)	are_mf_params_set() (in Model_free)

B

back_calc() (in Relax_data)	backtrack() (in minimise.line_search.backtrack)	BaseError (in RelaxErrors)
back_calc() (in Model_free)	base_class (in specific_fns)	bfgs (in minimise)
back_calc() (in Rx_data)	base_classes (in minimise)	Bfgs (in minimise.bfgs)
backline() (in Line_search)	base_map (in dx)	bfgs() (in minimise.bfgs)
backtrack (in minimise.line_search)	Base_Map (in dx.base_map)	bic() (in Model_selection)

C

calc() (in Minimise)	calc_diff_S2f_S2_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_d2jw_dS2fdtf() (in maths_fns.jw_mf)
calc() (in Minimisation)	calc_diff_S2f_S2_ts_d2jw_dDjdts() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_d2jw_dtf2() (in maths_fns.jw_mf)
calc_aniso_ci() (in maths_fns.weights)	calc_diff_S2f_S2_ts_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_djw_comps() (in maths_fns.jw_mf_comps)
calc_aniso_d2ci() (in maths_fns.weights)	calc_diff_S2f_S2_ts_d2jw_dPsijdS2() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_djw_dS2f() (in maths_fns.jw_mf)
calc_aniso_d2geom() (in maths_fns.geometry)	calc_diff_S2f_S2_ts_d2jw_dPsijdS2f() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_djw_dS2s() (in maths_fns.jw_mf)
calc_aniso_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_S2_ts_d2jw_dPsijdts() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_djw_dtf() (in maths_fns.jw_mf)
calc_aniso_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_S2_ts_djw_comps() (in maths_fns.jw_mf_comps)	calc_S2f_tf_S2s_ts_jw() (in maths_fns.jw_mf)
calc_aniso_d2ti() (in maths_fns.correlation_time)	calc_diff_S2f_S2_ts_djw_dDj() (in maths_fns.jw_mf)	calc_S2f_tf_S2s_ts_jw_comps() (in maths_fns.jw_mf_comps)
calc_aniso_dci() (in maths_fns.weights)	calc_diff_S2f_S2_ts_djw_dPsij() (in maths_fns.jw_mf)	calc_sigma_noe() (in Mapping)
calc_aniso_dgeom() (in maths_fns.geometry)	calc_diff_S2f_S2s_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calculate() (in Jw_mapping)
calc_aniso_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calculate() (in Model_free)
calc_aniso_dti() (in maths_fns.correlation_time)	calc_diff_S2f_S2s_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calculate() (in Noe)
calc_aniso_geom() (in maths_fns.geometry)	calc_diff_S2f_S2s_ts_d2jw_dDjdS2s() (in maths_fns.jw_mf)	cauchy_point (in minimise)
calc_aniso_S2_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_d2jw_dDjdts() (in maths_fns.jw_mf)	Cauchy_point (in minimise.cauchy_point)
calc_aniso_S2_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	cauchy_point() (in minimise.cauchy_point)
calc_aniso_S2_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_d2jw_dPsijdS2f() (in maths_fns.jw_mf)	chi2 (in maths_fns)
calc_aniso_S2_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_d2jw_dPsijdts() (in maths_fns.jw_mf)	chi2() (in maths_fns.chi2)
calc_aniso_S2_te_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_djw_comps() (in maths_fns.jw_mf_comps)	cholesky (in minimise.hessian_mods)
calc_aniso_S2_te_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_djw_dDj() (in maths_fns.jw_mf)	cholesky() (in Hessian_mods)
calc_aniso_S2_te_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_diff_S2f_S2s_ts_djw_dPsij() (in maths_fns.jw_mf)	cholesky() (in minimise.hessian_mods.cholesky)
calc_aniso_S2_te_d2jw_dDjdte() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	clear_history() (in Molmol)
calc_aniso_S2_te_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	clear_history() (in Molmol)
calc_aniso_S2f_S2_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	close_all_pipes() (in RelaxThread)
calc_aniso_S2f_S2_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dDjdtf() (in maths_fns.jw_mf)	command (in prompt)
calc_aniso_S2f_S2_ts_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	command() (in Molmol)
calc_aniso_S2f_S2_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dPsijdS2f() (in maths_fns.jw_mf)	Common_functions (in specific_fns.base_class)
calc_aniso_S2f_S2_ts_d2jw_dDjdts() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_d2jw_dPsijdtf() (in maths_fns.jw_mf)	comp_csa_const_func() (in maths_fns.ri_comps)
calc_aniso_S2f_S2_ts_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_djw_comps() (in maths_fns.jw_mf_comps)	comp_csa_const_grad() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_djw_dDj() (in maths_fns.jw_mf)	comp_csa_const_hess() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2_ts_djw_dPsij() (in maths_fns.jw_mf)	comp_dip_const_func() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	comp_dip_const_grad() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_d2jw_dDjdS2s() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	comp_dip_const_hess() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_d2jw_dDjdts() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	comp_r1_csa_const() (in maths_fns.ri_comps)
calc_aniso_S2f_S2s_ts_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dDjdtf() (in maths_fns.jw_mf)	comp_r1_csa_jw() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	comp_r1_dip_jw() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dPsijdS2f() (in maths_fns.jw_mf)	comp_r2_csa_const() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dPsijdS2s() (in maths_fns.jw_mf)	comp_r2_csa_jw() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2_ts_d2jw_dDjdtf() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_d2jw_dPsijdtf() (in maths_fns.jw_mf)	comp_r2_dip_const() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2_ts_djw_dDj() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_djw_comps() (in maths_fns.jw_mf_comps)	comp_r2_dip_jw() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2s_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_djw_dDj() (in maths_fns.jw_mf)	comp_rex_const_func() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2s_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_diff_S2f_tf_S2s_ts_djw_dPsij() (in maths_fns.jw_mf)	comp_rex_const_grad() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2s_ts_d2jw_dDjdS2f() (in maths_fns.jw_mf)	calc_dnoe() (in maths_fns.ri)	comp_sigma_noe_dip_jw() (in maths_fns.ri_comps)
calc_aniso_S2f_tf_S2s_ts_d2jw_dDjdtf() (in maths_fns.jw_mf)	calc_dr1() (in maths_fns.ri)	config() (in Iso3D)
calc_aniso_S2f_tf_S2s_ts_djw_dDj() (in maths_fns.jw_mf)	calc_fixed_csa() (in maths_fns.ri_comps)	Conjugate_gradient (in minimise.base_classes)
calc_aniso_ti() (in maths_fns.correlation_time)	calc_fixed_dip() (in maths_fns.ri_comps)	constraint_linear (in minimise)
calc_axial_ci() (in maths_fns.weights)	calc_iso_ci() (in maths_fns.weights)	Constraint_linear (in minimise.constraint_linear)
calc_axial_d2ci() (in maths_fns.weights)	calc_iso_dti() (in maths_fns.correlation_time)	contract() (in Simplex)
calc_axial_d2geom() (in maths_fns.geometry)	calc_iso_ti() (in maths_fns.correlation_time)	contract_orig() (in Simplex)
calc_axial_d2ti() (in maths_fns.correlation_time)	calc_jw() (in maths_fns.jw_mf)	conv_test() (in Simplex)
calc_axial_dci() (in maths_fns.weights)	calc_noe() (in maths_fns.ri)	coordinate_descent (in minimise)
calc_axial_dgeom() (in maths_fns.geometry)	calc_r1() (in maths_fns.ri)	Coordinate_descent (in minimise.coordinate_descent)
calc_axial_dti() (in maths_fns.correlation_time)	calc_ri() (in Mf)	coordinate_descent() (in minimise.coordinate_descent)
calc_axial_geom() (in maths_fns.geometry)	calc_S2_djw_dS2() (in maths_fns.jw_mf)	copy() (in Diffusion_tensor)
calc_axial_ti() (in maths_fns.correlation_time)	calc_S2_jw() (in maths_fns.jw_mf)	copy() (in Results)
calc_bk() (in Fletcher_reeves)	calc_S2_te_d2jw_dS2dte() (in maths_fns.jw_mf)	copy() (in Sequence)
calc_bk() (in Hestenes_stiefel)	calc_S2_te_d2jw_dte2() (in maths_fns.jw_mf)	copy() (in Value)
calc_bk() (in Polak_ribiere)	calc_S2_te_djw_comps() (in maths_fns.jw_mf_comps)	copy() (in Diffusion_tensor)
calc_bk() (in Polak_ribiere_plus)	calc_S2_te_djw_dS2() (in maths_fns.jw_mf)	copy() (in Model_free)
calc_d2noe() (in maths_fns.ri)	calc_S2_te_djw_dte() (in maths_fns.jw_mf)	copy() (in Relax_data)
calc_d2r1() (in maths_fns.ri)	calc_S2_te_jw() (in maths_fns.jw_mf)	copy() (in Sequence)
calc_diff_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_S2_te_jw_comps() (in maths_fns.jw_mf_comps)	copy() (in Value)
calc_diff_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_S2f_S2_ts_d2jw_dS2dts() (in maths_fns.jw_mf)	copy() (in Model_free)
calc_diff_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	calc_S2f_S2_ts_d2jw_dS2fdts() (in maths_fns.jw_mf)	copy() (in Rx_data)
calc_diff_djw_comps() (in maths_fns.jw_mf_comps)	calc_S2f_S2_ts_d2jw_dts2() (in maths_fns.jw_mf)	copy_save_file() (in RelaxThread)
calc_diff_djw_dDj() (in maths_fns.jw_mf)	calc_S2f_S2_ts_djw_comps() (in maths_fns.jw_mf_comps)	correlation_time (in maths_fns)
calc_diff_djw_dPsij() (in maths_fns.jw_mf)	calc_S2f_S2_ts_djw_dS2() (in maths_fns.jw_mf)	create() (in Palmer)
calc_diff_S2_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_S2f_S2_ts_djw_dS2f() (in maths_fns.jw_mf)	create() (in Runs)
calc_diff_S2_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_S2f_S2_ts_djw_dts() (in maths_fns.jw_mf)	create() (in Palmer)
calc_diff_S2_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_S2f_S2_ts_jw() (in maths_fns.jw_mf)	create() (in Run)
calc_diff_S2_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	calc_S2f_S2_ts_jw_comps() (in maths_fns.jw_mf_comps)	create_data() (in Monte_carlo)
calc_diff_S2_d2jw_dPsijdS2() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_d2jw_dS2fdS2s() (in maths_fns.jw_mf)	create_data() (in Monte_carlo)
calc_diff_S2_djw_dDj() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_d2jw_dS2fdts() (in maths_fns.jw_mf)	create_list() (in Tab_completion)
calc_diff_S2_djw_dPsij() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_d2jw_dS2sdts() (in maths_fns.jw_mf)	create_lm_matrix() (in Levenberg_marquardt)
calc_diff_S2_te_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_d2jw_dts2() (in maths_fns.jw_mf)	create_map() (in Iso3D)
calc_diff_S2_te_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_djw_comps() (in maths_fns.jw_mf_comps)	create_mc_data() (in Model_free)
calc_diff_S2_te_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_djw_dS2f() (in maths_fns.jw_mf)	create_mfdata() (in Palmer)
calc_diff_S2_te_d2jw_dDjdte() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_djw_dts() (in maths_fns.jw_mf)	create_mfin() (in Palmer)
calc_diff_S2_te_d2jw_dPsijdPsik() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_jw() (in maths_fns.jw_mf)	create_mfmodel() (in Palmer)
calc_diff_S2_te_d2jw_dPsijdS2() (in maths_fns.jw_mf)	calc_S2f_S2s_ts_jw_comps() (in maths_fns.jw_mf_comps)	create_mfpar() (in Palmer)
calc_diff_S2_te_d2jw_dPsijdte() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_d2jw_dS2fdtf() (in maths_fns.jw_mf)	create_model() (in Model_free)
calc_diff_S2_te_djw_comps() (in maths_fns.jw_mf_comps)	calc_S2f_tf_S2_ts_d2jw_dtf2() (in maths_fns.jw_mf)	create_model() (in Model_free)
calc_diff_S2_te_djw_dDj() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_djw_comps() (in maths_fns.jw_mf_comps)	create_point() (in Iso3D)
calc_diff_S2_te_djw_dPsij() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_djw_dS2f() (in maths_fns.jw_mf)	create_run() (in Palmer)
calc_diff_S2f_S2_ts_d2jw_dDjdDk() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_djw_dtf() (in maths_fns.jw_mf)	create_sublist() (in Tab_completion)
calc_diff_S2f_S2_ts_d2jw_dDjdPsij() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_jw() (in maths_fns.jw_mf)	cubic_ext() (in minimise.line_search.interpolate)
calc_diff_S2f_S2_ts_d2jw_dDjdS2() (in maths_fns.jw_mf)	calc_S2f_tf_S2_ts_jw_comps() (in maths_fns.jw_mf_comps)	cubic_int() (in minimise.line_search.interpolate)

D

d2chi2() (in maths_fns.chi2)	delete() (in Runs)	display() (in Sequence)
d2func_all() (in Mf)	delete() (in Sequence)	display() (in Value)
d2func_diff() (in Mf)	delete() (in IO)	display() (in Diffusion_tensor)
d2func_local_tm() (in Mf)	delete() (in Diffusion_tensor)	display() (in Relax_data)
d2func_mf() (in Mf)	delete() (in Model_free)	display() (in Results)
d2r1_comps() (in maths_fns.ri_comps)	delete() (in Relax_data)	display() (in Sequence)
d2ri_comps() (in maths_fns.ri_comps)	delete() (in Run)	display() (in Value)
d2ri_comps_csa() (in maths_fns.ri_comps)	delete() (in Sequence)	display() (in Rx_data)
d2ri_comps_r() (in maths_fns.ri_comps)	delete() (in Model_free)	doc (in Minimisation)
d2ri_comps_r_csa() (in maths_fns.ri_comps)	delete() (in Rx_data)	dogleg (in minimise)
data	determine_param_set_type() (in Model_free)	Dogleg (in minimise.dogleg)
Data (in data)	dfunc() (in Constraint_linear)	dogleg() (in Dogleg)
Data (in maths_fns.jw_mapping)	dfunc1() (in minimise.line_search.test_functions)	dogleg() (in minimise.dogleg)
Data (in maths_fns.mf)	dfunc2() (in minimise.line_search.test_functions)	double_test() (in Min)
data() (in Grace)	dfunc3() (in minimise.line_search.test_functions)	dr1_comps() (in maths_fns.ri_comps)
data_init() (in Jw_mapping)	dfunc456() (in minimise.line_search.test_functions)	dri_comps() (in maths_fns.ri_comps)
data_init() (in Model_free)	dfunc_all() (in Mf)	dri_comps_csa() (in maths_fns.ri_comps)
data_init() (in Rx_data)	dfunc_diff() (in Mf)	dri_comps_csa_rex() (in maths_fns.ri_comps)
data_names() (in Diffusion_tensor)	dfunc_local_tm() (in Mf)	dri_comps_r() (in maths_fns.ri_comps)
data_names() (in Sequence)	dfunc_mf() (in Mf)	dri_comps_r_csa() (in maths_fns.ri_comps)
data_names() (in Jw_mapping)	diffusion_tensor (in generic_fns)	dri_comps_r_csa_rex() (in maths_fns.ri_comps)
data_names() (in Model_free)	Diffusion_tensor (in generic_fns.diffusion_tensor)	dri_comps_r_rex() (in maths_fns.ri_comps)
data_names() (in Rx_data)	diffusion_tensor (in prompt)	dri_comps_rex() (in maths_fns.ri_comps)
dchi2() (in maths_fns.chi2)	Diffusion_tensor (in prompt.diffusion_tensor)	duplicate_data() (in Model_free)
default_value() (in Jw_mapping)	disassemble_param_vector() (in Model_free)	dx
default_value() (in Model_free)	display() (in Diffusion_tensor)	dx (in prompt)
delete() (in Diffusion_tensor)	display() (in Results)

E

eigenvalue (in minimise.hessian_mods)	error() (in Noe)	execute() (in Palmer)
eigenvalue() (in Hessian_mods)	error() (in RelaxParser)	execute() (in Threading)
eigenvalue() (in minimise.hessian_mods.eigenvalue)	error_analysis() (in Monte_carlo)	extend() (in Simplex)
Element (in data)	error_analysis() (in Monte_carlo)	extract() (in Palmer)
eliminate (in generic_fns)	errors	extract() (in Palmer)
Eliminate (in generic_fns.eliminate)	exact_trust_region (in minimise)	extract_d2r1() (in maths_fns.ri)
eliminate (in prompt)	Exact_trust_region (in minimise.exact_trust_region)	extract_data() (in IO)
Eliminate (in prompt.eliminate)	exact_trust_region() (in minimise.exact_trust_region)	extract_dr1() (in maths_fns.ri)
eliminate() (in Eliminate)	exec_phasetwo() (in minimise.hessian_mods.se99)	extract_int_data() (in Intensity)
eliminate() (in Eliminate)	exec_relax() (in RelaxThread)	extract_r1() (in maths_fns.ri)
eliminate() (in Model_free)	execute() (in Palmer)
eliminate_unused_runs() (in Runs)	execute() (in OpenDX)

F

file_path() (in IO)	func() (in Mapping)	func_d2ri_dr2_prime() (in maths_fns.ri_prime)
find_index() (in Rx_data)	func() (in Constraint_linear)	func_diff() (in Mf)
find_nucleus() (in Nuclei)	func1() (in minimise.line_search.test_functions)	func_dLA() (in Method_of_multipliers)
finish() (in Tab_completion)	func2() (in minimise.line_search.test_functions)	func_dri_dcsa_prime() (in maths_fns.ri_prime)
fix (in generic_fns)	func3() (in minimise.line_search.test_functions)	func_dri_djw_prime() (in maths_fns.ri_prime)
Fix (in generic_fns.fix)	func456() (in minimise.line_search.test_functions)	func_dri_dr_prime() (in maths_fns.ri_prime)
fix (in prompt)	func_all() (in Mf)	func_dri_drex_prime() (in maths_fns.ri_prime)
Fix (in prompt.fix)	func_d2LA() (in Method_of_multipliers)	func_LA() (in Method_of_multipliers)
fix() (in Fix)	func_d2LA_simple() (in Method_of_multipliers)	func_local_tm() (in Mf)
fix() (in Fix)	func_d2ri_dcsa2_prime() (in maths_fns.ri_prime)	func_mf() (in Mf)
Fletcher_reeves (in minimise.fletcher_reeves_cg)	func_d2ri_djwdcsa_prime() (in maths_fns.ri_prime)	func_ri_prime() (in maths_fns.ri_prime)
fletcher_reeves() (in minimise.fletcher_reeves_cg)	func_d2ri_djwdr_prime() (in maths_fns.ri_prime)	func_ri_prime_rex() (in maths_fns.ri_prime)
fletcher_reeves_cg (in minimise)	func_d2ri_djwidjwj_prime() (in maths_fns.ri_prime)	func_test() (in Min)

G

gc() (in Nuclei)	get_param_values() (in Model_free)	GPL (in prompt.gpl)
general() (in Iso3D)	get_pk() (in Ncg)	gpl() (in prompt.gpl)
generate_script() (in RelaxMinimiseThread)	get_pk() (in Steihaug)	grace (in generic_fns)
Generic (in generic_fns.main)	get_string() (in Specific_setup)	Grace (in generic_fns.grace)
generic (in minimise)	get_tau() (in Steihaug)	grace (in minimise.line_search)
generic_fns	gh() (in Nuclei)	grace (in prompt)
generic_minimise() (in minimise.generic)	gmw() (in Hessian_mods)	Grace (in prompt.grace)
geometry (in maths_fns)	gmw() (in minimise.hessian_mods.gmw81)	grad_test() (in Min)
get_chi2() (in Palmer)	gmw81 (in minimise.hessian_mods)	grid (in minimise)
get_data_name() (in Jw_mapping)	gmw81_old (in minimise.hessian_mods)	grid() (in minimise.grid)
get_data_name() (in Model_free)	gmw_old() (in Hessian_mods)	grid_search() (in Minimise)
get_data_name() (in Noe)	gmw_old() (in minimise.hessian_mods.gmw81_old)	grid_search() (in Minimisation)
get_data_name() (in Relax_fit)	gn() (in Nuclei)	grid_search() (in Model_free)
get_date() (in Iso3D)	go() (in Nuclei)	grid_search_setup() (in Model_free)
get_mf_data() (in Palmer)	gp() (in Nuclei)
get_param_names() (in Model_free)	gpl (in prompt)

H

header() (in Grace)	hessian_type_and_mod() (in Min)	hestenes_stiefel() (in minimise.hestenes_stiefel_cg)
help (in prompt)	hessian_update_bfgs() (in Dogleg)	hestenes_stiefel_cg (in minimise)
Hessian_mods (in minimise.base_classes)	hessian_update_newton() (in Dogleg)
hessian_mods (in minimise)	Hestenes_stiefel (in minimise.hestenes_stiefel_cg)

I

i (in Minimisation)	initial_values() (in Monte_carlo)	interpreter (in prompt)
init() (in Init_data)	initialise_data() (in Common_functions)	Interpreter (in prompt.interpreter)
init_data (in prompt)	initialise_relax_data() (in Rx_data)	io
Init_data (in prompt.init_data)	intensity (in generic_fns)	IO (in io)
init_diff_data() (in Mf)	Intensity (in generic_fns.intensity)	Iso3D (in dx.isosurface_3D)
init_res_data() (in Mf)	interact_prompt() (in prompt.interpreter)	isosurface_3D (in dx)
init_res_r1_data() (in Mf)	interact_script() (in prompt.interpreter)	isotropic() (in Diffusion_tensor)
initial_values() (in Monte_carlo)	interpolate (in minimise.line_search)

J

jiter_factor() (in minimise.hessian_mods.se99)	jw_mapping (in prompt)	Jw_mapping (in specific_fns.jw_mapping)
jw_funcs() (in Specific_setup)	Jw_mapping (in prompt.jw_mapping)	jw_mf (in maths_fns)
jw_mapping (in maths_fns)	jw_mapping (in specific_fns)	jw_mf_comps (in maths_fns)

K

kill() (in RelaxPopen3)	kill() (in RelaxThread)

L

levenberg_marquardt (in minimise)	line_search_options() (in Line_search)	load() (in State)
Levenberg_marquardt (in minimise.levenberg_marquardt)	linear_constraints() (in Model_free)	load_PDB_sequence() (in Sequence)
levenberg_marquardt() (in minimise.levenberg_marquardt)	list_of_runs() (in Runs)	load_structures() (in PDB)
Lh (in prompt.command)	Ll (in prompt.command)	log() (in IO)
licence() (in Relax)	lm_dri() (in Mf)	logging_off() (in IO)
Line_search (in minimise.base_classes)	load() (in PDB)	Ls (in prompt.command)
line_search (in minimise)	load() (in State)

M

main (in generic_fns)	Minimisation (in prompt.minimisation)	model_selection (in prompt)
main (in specific_fns)	minimise (in generic_fns)	model_selection() (in Modsel)
map() (in OpenDX)	Minimise (in generic_fns.minimise)	model_setup() (in Model_free)
map() (in OpenDX)	minimise	model_statistics() (in Model_free)
map_bounds() (in Model_free)	minimise() (in Minimise)	Modsel (in prompt.model_selection)
map_labels() (in Model_free)	minimise() (in Min)	molmol (in generic_fns)
map_space() (in Base_Map)	minimise() (in Method_of_multipliers)	Molmol (in generic_fns.molmol)
Mapping (in maths_fns.jw_mapping)	minimise() (in Minimisation)	molmol (in prompt)
maths_fns	minimise() (in Model_free)	Molmol (in prompt.molmol)
method_of_multipliers (in minimise)	mkdir() (in IO)	monte_carlo (in generic_fns)
Method_of_multipliers (in minimise.method_of_multipliers)	mkdir() (in RelaxThread)	Monte_carlo (in generic_fns.monte_carlo)
method_of_multipliers() (in minimise.method_of_multipliers)	model_free (in prompt)	monte_carlo (in prompt)
mf (in maths_fns)	Model_free (in prompt.model_free)	Monte_carlo (in prompt.monte_carlo)
Mf (in maths_fns.mf)	model_free (in specific_fns)	more_thuente (in minimise.line_search)
mf_funcs() (in Specific_setup)	Model_free (in specific_fns.model_free)	more_thuente() (in minimise.line_search.more_thuente)
Min (in minimise.base_classes)	model_selection (in generic_fns)	mt() (in Line_search)
minimisation (in prompt)	Model_selection (in generic_fns.model_selection)

N

ncg (in minimise)	new_param_func() (in Steepest_descent)	Noe (in specific_fns.noe)
Ncg (in minimise.ncg)	new_param_func() (in Steihaug)	noe() (in Specific_setup)
ncg() (in minimise.ncg)	newton (in minimise)	nuclei (in generic_fns)
new_param_func() (in Conjugate_gradient)	Newton (in minimise.newton)	Nuclei (in generic_fns.nuclei)
new_param_func() (in Bfgs)	newton() (in minimise.newton)	nuclei (in prompt)
new_param_func() (in Cauchy_point)	no_search() (in Line_search)	Nuclei (in prompt.nuclei)
new_param_func() (in Coordinate_descent)	nocedal_wright_interpol (in minimise.line_search)	nuclei() (in Nuclei)
new_param_func() (in Dogleg)	nocedal_wright_interpol() (in minimise.line_search.nocedal_wright_interpol)	num_instances() (in Jw_mapping)
new_param_func() (in Exact_trust_region)	nocedal_wright_wolfe (in minimise.line_search)	num_instances() (in Model_free)
new_param_func() (in Levenberg_marquardt)	nocedal_wright_wolfe() (in minimise.line_search.nocedal_wright_wolfe)	nwi() (in Line_search)
new_param_func() (in Ncg)	noe (in prompt)	nww() (in Line_search)
new_param_func() (in Newton)	Noe (in prompt.noe)
new_param_func() (in Simplex)	noe (in specific_fns)

O

off() (in Monte_carlo)	on() (in Monte_carlo)	open_write_file() (in IO)
off() (in Monte_carlo)	open_file() (in Palmer)	opendx (in dx)
old_cg_conv_test() (in Conjugate_gradient)	open_pdb() (in Molmol)	OpenDX (in dx.opendx)
old_param_func() (in Exact_trust_region)	open_pipe() (in Molmol)	OpenDX (in prompt.dx)
on() (in Monte_carlo)	open_read_file() (in IO)	order_simplex() (in Simplex)

P

palmer (in generic_fns)	Polak_ribiere (in minimise.polak_ribiere_cg)	print_data() (in minimise.line_search.more_thuente)
Palmer (in generic_fns.palmer)	polak_ribiere() (in minimise.polak_ribiere_cg)	print_data() (in minimise.line_search.nocedal_wright_interpol)
palmer (in prompt)	polak_ribiere_cg (in minimise)	print_data() (in minimise.line_search.nocedal_wright_wolfe)
Palmer (in prompt.palmer)	Polak_ribiere_plus (in minimise.polak_ribiere_plus_cg)	printout() (in Method_of_multipliers)
pdb (in generic_fns)	polak_ribiere_plus() (in minimise.polak_ribiere_plus_cg)	processes
PDB (in generic_fns.pdb)	polak_ribiere_plus_cg (in minimise)	program() (in Iso3D)
pdb (in prompt)	post_locked_code() (in RelaxMinimiseThread)	prompt
PDB (in prompt.pdb)	post_locked_code() (in RelaxHostThread)	prompt() (in prompt.interpreter)
pdb() (in PDB)	pre_locked_code() (in RelaxHostThread)
pipe_open() (in Molmol)	pre_locked_code() (in RelaxThread)

Q

quadratic_fafbga() (in minimise.line_search.interpolate)	quadratic_gagb() (in minimise.line_search.interpolate)

R

r1_comps() (in maths_fns.ri_comps)	RelaxHostParentThread (in thread_classes)	RelaxTensorError (in RelaxErrors)
read() (in Intensity)	RelaxHostThread (in thread_classes)	RelaxThread (in thread_classes)
read() (in Results)	RelaxIntError (in RelaxErrors)	RelaxTupleError (in RelaxErrors)
read() (in Sequence)	RelaxIntListIntError (in RelaxErrors)	RelaxUnknownParamCombError (in RelaxErrors)
read() (in Value)	RelaxIntStrError (in RelaxErrors)	RelaxValueError (in RelaxErrors)
read() (in Noe)	RelaxInvalidDataError (in RelaxErrors)	remote_command() (in RelaxThread)
read() (in Relax_data)	RelaxInvalidError (in RelaxErrors)	remove_tm() (in Model_free)
read() (in Relax_fit)	RelaxKillThread (in thread_classes)	remove_tm() (in Model_free)
read() (in Results)	RelaxLenError (in RelaxErrors)	res() (in Select)
read() (in Select)	RelaxListError (in RelaxErrors)	res() (in Unselect)
read() (in Sequence)	RelaxListFloatError (in RelaxErrors)	reset_min_stats() (in Value)
read() (in Threading)	RelaxListIntError (in RelaxErrors)	Residue (in data)
read() (in Unselect)	RelaxListNumError (in RelaxErrors)	ResidueList (in data)
read() (in Value)	RelaxListStrError (in RelaxErrors)	results (in generic_fns)
read() (in Noe)	RelaxMfError (in RelaxErrors)	Results (in generic_fns.results)
read() (in Rx_data)	RelaxMinimiseThread (in generic_fns.minimise)	results (in prompt)
read() (in Relax_fit)	RelaxMinParentThread (in generic_fns.minimise)	Results (in prompt.results)
read() (in Threading)	RelaxNoMfModelError (in RelaxErrors)	return_data() (in Common_functions)
read_columnar_col_numbers() (in Model_free)	RelaxNoneError (in RelaxErrors)	return_error() (in Common_functions)
read_columnar_diff_tensor() (in Model_free)	RelaxNoneFloatError (in RelaxErrors)	return_value() (in Jw_mapping)
read_columnar_find_index() (in Model_free)	RelaxNoneFloatListError (in RelaxErrors)	return_value() (in Model_free)
read_columnar_model_free_data() (in Model_free)	RelaxNoneIntError (in RelaxErrors)	return_value() (in Noe)
read_columnar_param_set() (in Model_free)	RelaxNoneIntStrError (in RelaxErrors)	return_value() (in Rx_data)
read_columnar_pdb() (in Model_free)	RelaxNoneListError (in RelaxErrors)	return_value() (in Relax_fit)
read_columnar_relax_data() (in Model_free)	RelaxNoneNumError (in RelaxErrors)	reverse() (in Selection)
read_columnar_results() (in Model_free)	RelaxNoneStrError (in RelaxErrors)	reverse() (in Select)
read_columnar_results() (in Noe)	RelaxNoneStrListError (in RelaxErrors)	reverse() (in Unselect)
read_columnar_results() (in Relax_fit)	RelaxNoneTupleError (in RelaxErrors)	ri (in maths_fns)
read_columnar_sequence() (in Model_free)	RelaxNoPdbError (in RelaxErrors)	ri_comps (in maths_fns)
read_columnar_xh_vect() (in Model_free)	RelaxNoResError (in RelaxErrors)	ri_comps() (in maths_fns.ri_comps)
reflect() (in Simplex)	RelaxNoRiError (in RelaxErrors)	ri_comps_csa() (in maths_fns.ri_comps)
Relax (in script-relax)	RelaxNoRunError (in RelaxErrors)	ri_comps_csa_rex() (in maths_fns.ri_comps)
relax_class_help (in prompt.help)	RelaxNoSequenceError (in RelaxErrors)	ri_comps_r() (in maths_fns.ri_comps)
relax_data (in prompt)	RelaxNoTensorError (in RelaxErrors)	ri_comps_r_csa() (in maths_fns.ri_comps)
Relax_data (in prompt.relax_data)	RelaxNoValueError (in RelaxErrors)	ri_comps_r_csa_rex() (in maths_fns.ri_comps)
relax_data (in specific_fns)	RelaxNoVectorsError (in RelaxErrors)	ri_comps_r_rex() (in maths_fns.ri_comps)
relax_fit (in prompt)	RelaxNucleusError (in RelaxErrors)	ri_comps_rex() (in maths_fns.ri_comps)
Relax_fit (in prompt.relax_fit)	RelaxNumError (in RelaxErrors)	ri_prime (in maths_fns)
relax_fit (in specific_fns)	RelaxNumTupleError (in RelaxErrors)	run (in prompt)
Relax_fit (in specific_fns.relax_fit)	RelaxParentThread (in thread_classes)	Run (in prompt.run)
relax_funcs() (in Specific_setup)	RelaxParser (in script-relax)	run() (in OpenDX)
RelaxArgNotInListError (in RelaxErrors)	RelaxPdbError (in RelaxErrors)	run() (in minimise.line_search.test_functions)
RelaxBinError (in RelaxErrors)	RelaxPdbLoadError (in RelaxErrors)	run() (in Interpreter)
RelaxDiffSeqError (in RelaxErrors)	RelaxPopen3 (in processes)	run() (in RelaxKillThread)
RelaxDirError (in RelaxErrors)	RelaxProgError (in RelaxErrors)	run() (in RelaxParentThread)
RelaxError (in RelaxErrors)	RelaxProgFailError (in RelaxErrors)	run() (in RelaxResultsThread)
RelaxErrors (in errors)	RelaxRegExpError (in RelaxErrors)	run() (in RelaxThread)
RelaxFileEmptyError (in RelaxErrors)	RelaxResultsThread (in thread_classes)	run_script() (in prompt.interpreter)
RelaxFileError (in RelaxErrors)	RelaxRiError (in RelaxErrors)	runcode() (in prompt.interpreter)
RelaxFileOverwriteError (in RelaxErrors)	RelaxRunError (in RelaxErrors)	runs (in generic_fns)
RelaxFloatError (in RelaxErrors)	RelaxSequenceError (in RelaxErrors)	Runs (in generic_fns.runs)
RelaxFuncSetupError (in RelaxErrors)	RelaxStrError (in RelaxErrors)	Rx_data (in specific_fns.relax_data)
RelaxFunctionError (in RelaxErrors)	RelaxStrListStrError (in RelaxErrors)

S

safeguard() (in Exact_trust_region)	set() (in Value)	simplex (in minimise)
save() (in State)	set() (in Jw_mapping)	Simplex (in minimise.simplex)
save() (in State)	set() (in Model_free)	simplex() (in minimise.simplex)
script() (in Interpreter)	set_error() (in Jw_mapping)	skip_function() (in Model_free)
script-clean_up	set_error() (in Model_free)	sort() (in Sequence)
script-README	set_error() (in Noe)	sort() (in Sequence)
script-relax	set_error() (in Relax_fit)	sort_cmpfunc() (in Sequence)
se99 (in minimise.hessian_mods)	set_frq() (in Jw_mapping)	Specific (in specific_fns.main)
se99() (in Hessian_mods)	set_frq() (in Jw_mapping)	specific_fns
se99() (in minimise.hessian_mods.se99)	set_intro_string() (in Relax)	specific_setup (in specific_fns)
sel_all() (in Selection)	set_values() (in Nuclei)	Specific_setup (in specific_fns.specific_setup)
sel_read() (in Selection)	set_vector() (in PDB)	SpecificData (in data)
sel_res() (in Selection)	setup() (in Monte_carlo)	split() (in SplitIO)
select (in prompt)	setup() (in Monte_carlo)	SplitIO (in io)
Select (in prompt.select)	setup() (in Specific_setup)	start_child() (in RelaxThread)
select() (in Model_selection)	setup_bfgs() (in Bfgs)	state (in generic_fns)
select_model() (in Model_free)	setup_conv_tests() (in Min)	State (in generic_fns.state)
select_model() (in Model_free)	setup_equations() (in Mf)	state (in prompt)
selection (in generic_fns)	setup_hessian_mod() (in Hessian_mods)	State (in prompt.state)
Selection (in generic_fns.selection)	setup_line_search() (in Line_search)	steepest_descent (in minimise)
sequence (in generic_fns)	setup_newton() (in Newton)	Steepest_descent (in minimise.steepest_descent)
Sequence (in generic_fns.sequence)	shrink() (in Simplex)	steepest_descent() (in minimise.steepest_descent)
sequence (in prompt)	sim_init_values() (in Model_free)	Steihaug (in minimise.steihaug_cg)
Sequence (in prompt.sequence)	sim_pack_data() (in Common_functions)	steihaug() (in minimise.steihaug_cg)
set() (in Diffusion_tensor)	sim_return_chi2() (in Model_free)	steihaug_cg (in minimise)
set() (in Value)	sim_return_param() (in Jw_mapping)	strip() (in IO)
set() (in Diffusion_tensor)	sim_return_param() (in Model_free)	system() (in prompt.command)

T

tab_completion (in prompt)	test_relax() (in RelaxHostThread)	thread_clean_up() (in RelaxParentThread)
Tab_completion (in prompt.tab_completion)	test_save_file() (in RelaxThread)	thread_object() (in RelaxMinParentThread)
tee() (in IO)	test_ssh() (in RelaxHostThread)	thread_object() (in RelaxHostParentThread)
test_dir() (in RelaxThread)	test_wd() (in RelaxHostThread)	ThreadData (in thread_classes)
test_functions (in minimise.line_search)	tests() (in Model_selection)	Threading (in prompt.thread)
test_labels() (in Rx_data)	text (in _Helper)	Threading (in thread_classes)
test_mod() (in Levenberg_marquardt)	text (in _Helper_python)	Trust_region (in minimise.base_classes)
test_mode() (in Relax)	thread (in prompt)	trust_region_update() (in Trust_region)
test_params() (in Diffusion_tensor)	thread_classes

U

unmodified_hessian() (in Hessian_mods)	update() (in Min)	update() (in Simplex)
unsel_all() (in Selection)	update() (in Cauchy_point)	update() (in Steepest_descent)
unsel_read() (in Selection)	update() (in Coordinate_descent)	update() (in Steihaug)
unsel_res() (in Selection)	update() (in Dogleg)	update_bfgs() (in Bfgs)
unselect (in prompt)	update() (in Exact_trust_region)	update_data_structures() (in Rx_data)
Unselect (in prompt.unselect)	update() (in Levenberg_marquardt)	update_newton() (in Newton)
unselect() (in Model_free)	update() (in minimise.line_search.more_thuente)
update() (in Conjugate_gradient)	update() (in Ncg)

V

valid_hessian_mod() (in Hessian_mods)	view (in prompt)	view() (in View)
valid_line_search() (in Line_search)	View (in prompt.view)	view() (in Vmd)
value (in generic_fns)	view() (in Grace)	vmd (in generic_fns)
Value (in generic_fns.value)	view() (in Molmol)	Vmd (in generic_fns.vmd)
value (in prompt)	view() (in Vmd)	vmd (in prompt)
Value (in prompt.value)	view() (in Grace)	Vmd (in prompt.vmd)
vectors() (in PDB)	view() (in Molmol)

W

weights (in maths_fns)	write() (in Relax_data)	write_columnar_line() (in Noe)
wrap_angles() (in Angles)	write() (in Results)	write_columnar_line() (in Relax_fit)
write() (in Grace)	write() (in Sequence)	write_columnar_results() (in Jw_mapping)
write() (in Molmol)	write() (in Value)	write_columnar_results() (in Model_free)
write() (in Results)	write() (in Noe)	write_columnar_results() (in Noe)
write() (in Sequence)	write() (in Rx_data)	write_columnar_results() (in Relax_fit)
write() (in Value)	write() (in Relax_fit)	write_data() (in Value)
write() (in SplitIO)	write_columnar_line() (in Jw_mapping)
write() (in Grace)	write_columnar_line() (in Model_free)

Z

zoom() (in minimise.line_search.nocedal_wright_wolfe)

_

__call__() (in _Helper)	__init__() (in RelaxStrError)	__init__() (in Init_data)
__call__() (in _Helper_python)	__init__() (in RelaxStrListStrError)	__init__() (in Interpreter)
__description__ (in Monte_carlo)	__init__() (in RelaxTensorError)	__init__() (in Jw_mapping)
__doc__ (in prompt)	__init__() (in RelaxTupleError)	__init__() (in Minimisation)
__init__() (in Data)	__init__() (in RelaxUnknownParamCombError)	__init__() (in Model_free)
__init__() (in Element)	__init__() (in RelaxValueError)	__init__() (in Modsel)
__init__() (in Residue)	__init__() (in RelaxErrors)	__init__() (in Molmol)
__init__() (in ResidueList)	__init__() (in Angles)	__init__() (in Monte_carlo)
__init__() (in SpecificData)	__init__() (in Diffusion_tensor)	__init__() (in Noe)
__init__() (in Base_Map)	__init__() (in Eliminate)	__init__() (in Nuclei)
__init__() (in Iso3D)	__init__() (in Fix)	__init__() (in Palmer)
__init__() (in OpenDX)	__init__() (in Grace)	__init__() (in PDB)
__init__() (in RelaxArgNotInListError)	__init__() (in Intensity)	__init__() (in Relax_data)
__init__() (in RelaxBinError)	__init__() (in Generic)	__init__() (in Relax_fit)
__init__() (in RelaxDiffSeqError)	__init__() (in Minimise)	__init__() (in Results)
__init__() (in RelaxDirError)	__init__() (in RelaxMinParentThread)	__init__() (in Run)
__init__() (in RelaxError)	__init__() (in RelaxMinimiseThread)	__init__() (in Select)
__init__() (in RelaxFileEmptyError)	__init__() (in Model_selection)	__init__() (in Sequence)
__init__() (in RelaxFileError)	__init__() (in Molmol)	__init__() (in State)
__init__() (in RelaxFileOverwriteError)	__init__() (in Monte_carlo)	__init__() (in Tab_completion)
__init__() (in RelaxFloatError)	__init__() (in Nuclei)	__init__() (in Threading)
__init__() (in RelaxFuncSetupError)	__init__() (in Palmer)	__init__() (in Unselect)
__init__() (in RelaxFunctionError)	__init__() (in PDB)	__init__() (in Value)
__init__() (in RelaxIntError)	__init__() (in Results)	__init__() (in View)
__init__() (in RelaxIntListIntError)	__init__() (in Runs)	__init__() (in Vmd)
__init__() (in RelaxIntStrError)	__init__() (in Selection)	__init__() (in Relax)
__init__() (in RelaxInvalidDataError)	__init__() (in Sequence)	__init__() (in RelaxParser)
__init__() (in RelaxInvalidError)	__init__() (in State)	__init__() (in Common_functions)
__init__() (in RelaxLenError)	__init__() (in Value)	__init__() (in Jw_mapping)
__init__() (in RelaxListError)	__init__() (in Vmd)	__init__() (in Specific)
__init__() (in RelaxListFloatError)	__init__() (in IO)	__init__() (in Model_free)
__init__() (in RelaxListIntError)	__init__() (in SplitIO)	__init__() (in Noe)
__init__() (in RelaxListNumError)	__init__() (in Data)	__init__() (in Rx_data)
__init__() (in RelaxListStrError)	__init__() (in Mapping)	__init__() (in Relax_fit)
__init__() (in RelaxMfError)	__init__() (in Data)	__init__() (in Specific_setup)
__init__() (in RelaxNoMfModelError)	__init__() (in Mf)	__init__() (in RelaxHostParentThread)
__init__() (in RelaxNoPdbError)	__init__() (in Conjugate_gradient)	__init__() (in RelaxHostThread)
__init__() (in RelaxNoResError)	__init__() (in Hessian_mods)	__init__() (in RelaxKillThread)
__init__() (in RelaxNoRiError)	__init__() (in Line_search)	__init__() (in RelaxParentThread)
__init__() (in RelaxNoRunError)	__init__() (in Min)	__init__() (in RelaxResultsThread)
__init__() (in RelaxNoSequenceError)	__init__() (in Trust_region)	__init__() (in RelaxThread)
__init__() (in RelaxNoTensorError)	__init__() (in Bfgs)	__init__() (in ThreadData)
__init__() (in RelaxNoValueError)	__init__() (in Cauchy_point)	__init__() (in Threading)
__init__() (in RelaxNoVectorsError)	__init__() (in Constraint_linear)	__re_doc__ (in Grace)
__init__() (in RelaxNoneError)	__init__() (in Coordinate_descent)	__re_doc__ (in Value)
__init__() (in RelaxNoneFloatError)	__init__() (in Dogleg)	__repr__() (in Data)
__init__() (in RelaxNoneFloatListError)	__init__() (in Exact_trust_region)	__repr__() (in Element)
__init__() (in RelaxNoneIntError)	__init__() (in Fletcher_reeves)	__repr__() (in Residue)
__init__() (in RelaxNoneIntStrError)	__init__() (in Hestenes_stiefel)	__repr__() (in ResidueList)
__init__() (in RelaxNoneListError)	__init__() (in Levenberg_marquardt)	__repr__() (in SpecificData)
__init__() (in RelaxNoneNumError)	__init__() (in Method_of_multipliers)	__repr__() (in Lh)
__init__() (in RelaxNoneStrError)	__init__() (in Ncg)	__repr__() (in Ll)
__init__() (in RelaxNoneStrListError)	__init__() (in Newton)	__repr__() (in Ls)
__init__() (in RelaxNoneTupleError)	__init__() (in Polak_ribiere)	__repr__() (in GPL)
__init__() (in RelaxNucleusError)	__init__() (in Polak_ribiere_plus)	__repr__() (in _Helper)
__init__() (in RelaxNumError)	__init__() (in Simplex)	__repr__() (in _Helper_python)
__init__() (in RelaxNumTupleError)	__init__() (in Steepest_descent)	__repr__() (in _Exit)
__init__() (in RelaxPdbError)	__init__() (in Steihaug)	__str__() (in BaseError)
__init__() (in RelaxPdbLoadError)	__init__() (in RelaxPopen3)	__warningregistry__ (in dx.isosurface_3D)
__init__() (in RelaxProgError)	__init__() (in Angles)	_Exit (in prompt.interpreter)
__init__() (in RelaxProgFailError)	__init__() (in Diffusion_tensor)	_Helper (in prompt.help)
__init__() (in RelaxRegExpError)	__init__() (in OpenDX)	_Helper_python (in prompt.help)
__init__() (in RelaxRiError)	__init__() (in Eliminate)	_off() (in Interpreter)
__init__() (in RelaxRunError)	__init__() (in Fix)	_on() (in Interpreter)
__init__() (in RelaxSequenceError)	__init__() (in Grace)