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P
pack_back_calc_r2eff()
(in
specific_analyses.relax_disp.data
)
pattern_e_semicolon
(in
bmrblib.pystarlib.Text
)
Polak_ribiere_plus
(in
minfx.polak_ribiere_plus_cg
)
pack_data()
(in
pipe_control.relax_data
)
pattern_eol_string
(in
bmrblib.pystarlib.Text
)
polak_ribiere_plus()
(in
minfx.polak_ribiere_plus_cg
)
pack_structs()
(in
Internal
)
pattern_eoline_etcet
(in
bmrblib.pystarlib.Text
)
polak_ribiere_plus_cg
(in
minfx
)
package()
(in
scons.distrib
)
pattern_nmrView_compress_empty
(in
bmrblib.pystarlib.Text
)
pop_up_menu()
(in
LogCtrl
)
package_checking
(in
test_suite.unit_tests
)
pattern_nmrView_compress_questionmark
(in
bmrblib.pystarlib.Text
)
populate_1st_eigenframe_iso_cone()
(in
lib.frame_order.iso_cone
)
package_info()
(in
Info_box
)
pattern_quoted
(in
bmrblib.pystarlib.Text
)
populate_2nd_eigenframe_iso_cone()
(in
lib.frame_order.iso_cone
)
PackageTestCase
(in
test_suite.unit_tests.package_checking
)
pattern_quoted_2
(in
bmrblib.pystarlib.Text
)
populate_2nd_eigenframe_iso_cone_free_rotor()
(in
lib.frame_order.iso_cone_free_rotor
)
packBytesAsPyFloat()
(in
lib.float
)
pattern_quotes_needed
(in
bmrblib.pystarlib.Text
)
populate_matrix()
(in
lib.dispersion.ns_mmq_2site
)
padw2
(in
lib.text.gui
)
pattern_quotes_needed_2
(in
bmrblib.pystarlib.Text
)
populate_matrix()
(in
lib.dispersion.ns_mmq_3site
)
page_index_from_bundle()
(in
Analysis_controller
)
pattern_s_quote
(in
bmrblib.pystarlib.Text
)
populate_self()
(in
Interpreter
)
page_name_from_bundle()
(in
Analysis_controller
)
pattern_save_begin
(in
bmrblib.pystarlib.Text
)
pos_inf
(in
lib.float
)
pages
(in
Clore90
)
pattern_save_begin_nws
(in
bmrblib.pystarlib.Text
)
PosEpsilonDenorm
(in
lib.float
)
pages
(in
Delaglio95
)
pattern_save_end
(in
bmrblib.pystarlib.Text
)
PosEpsilonNorm
(in
lib.float
)
pages
(in
LipariSzabo82a
)
pattern_save_end_nws
(in
bmrblib.pystarlib.Text
)
PosInf
(in
lib.float
)
pages
(in
LipariSzabo82b
)
pattern_semicolon_block
(in
bmrblib.pystarlib.Text
)
PosMax
(in
lib.float
)
pages
(in
Ref
)
pattern_single_qoute
(in
bmrblib.pystarlib.Text
)
PosNaN
(in
lib.float
)
pages
(in
dAuvergneGooley03
)
pattern_tag_name
(in
bmrblib.pystarlib.Text
)
PosNaN_A
(in
lib.float
)
pages
(in
dAuvergneGooley06
)
pattern_tag_name_nws
(in
bmrblib.pystarlib.Text
)
PosNaN_B
(in
lib.float
)
pages
(in
dAuvergneGooley07
)
pattern_tagname_2
(in
bmrblib.pystarlib.Text
)
PosNaN_C
(in
lib.float
)
pages
(in
dAuvergneGooley08a
)
pattern_tags_loop
(in
bmrblib.pystarlib.Text
)
post_input()
(in
Float_ctrl
)
pages
(in
dAuvergneGooley08b
)
pattern_tags_loop_2
(in
bmrblib.pystarlib.Text
)
post_reset()
(in
Analysis_controller
)
palmer
(in
pipe_control
)
pattern_tagtable_loop
(in
bmrblib.pystarlib.Text
)
post_run()
(in
Multi_processor
)
palmer
(in
test_suite.system_tests
)
pattern_tagtable_loop_2
(in
bmrblib.pystarlib.Text
)
post_run()
(in
Processor
)
Palmer
(in
test_suite.system_tests.palmer
)
pattern_tagtable_loop_nws
(in
bmrblib.pystarlib.Text
)
post_run()
(in
Uni_processor
)
palmer
(in
user_functions
)
pattern_tagtable_stop
(in
bmrblib.pystarlib.Text
)
PosZero
(in
lib.float
)
PARAGRAPH
(in
lib.text.string
)
pattern_tagtable_stop_2
(in
bmrblib.pystarlib.Text
)
potential
(in
target_functions
)
param_conversion()
(in
specific_analyses.relax_disp.parameters
)
pattern_unquoted_find()
(in
bmrblib.pystarlib.Text
)
pre_input()
(in
Float_ctrl
)
param_conversion()
(in
Test_b14
)
pattern_word
(in
bmrblib.pystarlib.Text
)
pre_ops()
(in
BaseSaveframe
)
param_conversion()
(in
Test_cr72
)
pcs
(in
lib.alignment
)
pre_ops()
(in
AutoRelaxationSaveframe
)
param_conversion()
(in
Test_dpl94
)
pcs
(in
pipe_control
)
pre_ops()
(in
HeteronuclNOESaveframe
)
param_conversion()
(in
Test_it99
)
pcs
(in
test_suite.system_tests
)
pre_ops()
(in
HeteronuclNOESaveframe_v2_1
)
param_conversion()
(in
Test_lm63
)
Pcs
(in
test_suite.system_tests.pcs
)
pre_ops()
(in
HeteronuclT1Saveframe_v2_1
)
param_conversion()
(in
Test_m61
)
pcs
(in
user_functions
)
pre_ops()
(in
HeteronuclT2Saveframe_v2_1
)
param_conversion()
(in
Test_m61b
)
pcs_constant()
(in
lib.physical_constants
)
pre_run()
(in
Multi_processor
)
param_conversion()
(in
Test_mmq_cr72
)
pcs_constant_grad()
(in
lib.alignment.pcs
)
pre_run()
(in
Processor
)
param_conversion()
(in
Test_mp05
)
pcs_numeric_int_double_rotor()
(in
lib.frame_order.double_rotor
)
pre_run_directory()
(in
Auto_relax_disp
)
param_conversion()
(in
Test_ns_cpmg_2site_3d
)
pcs_numeric_int_iso_cone()
(in
lib.frame_order.iso_cone
)
pre_run_parameters()
(in
Relax_disp
)
param_conversion()
(in
Test_ns_cpmg_2site_expanded
)
pcs_numeric_int_iso_cone_qrint()
(in
lib.frame_order.iso_cone
)
prepending_string
(in
bmrblib.pystarlib.Text
)
param_conversion()
(in
Test_tap03
)
pcs_numeric_int_iso_cone_torsionless()
(in
lib.frame_order.iso_cone_torsionless
)
preview_file()
(in
File_element
)
param_conversion()
(in
Test_tp02
)
pcs_numeric_int_iso_cone_torsionless_qrint()
(in
lib.frame_order.iso_cone_torsionless
)
preview_file()
(in
Selector_file
)
param_conversion()
(in
Test_tsmfk01
)
pcs_numeric_int_pseudo_ellipse()
(in
lib.frame_order.pseudo_ellipse
)
preview_file()
(in
Selector_file_multiple
)
param_index_to_param_info()
(in
specific_analyses.relax_disp.parameters
)
pcs_numeric_int_pseudo_ellipse_qrint()
(in
lib.frame_order.pseudo_ellipse
)
print_data()
(in
minfx.line_search.more_thuente
)
Param_list
(in
specific_analyses.parameter_object
)
pcs_numeric_int_pseudo_ellipse_torsionless()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
print_data()
(in
minfx.line_search.nocedal_wright_interpol
)
param_model_index()
(in
specific_analyses.n_state_model.parameters
)
pcs_numeric_int_pseudo_ellipse_torsionless_qrint()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
print_data()
(in
minfx.line_search.nocedal_wright_wolfe
)
param_num()
(in
specific_analyses.frame_order.parameters
)
pcs_numeric_int_rotor()
(in
lib.frame_order.rotor
)
print_frame_order_2nd_degree()
(in
lib.frame_order.format
)
param_num()
(in
specific_analyses.n_state_model.parameters
)
pcs_numeric_int_rotor_qrint()
(in
lib.frame_order.rotor
)
print_iter()
(in
minfx.base_classes
)
param_num()
(in
specific_analyses.relax_disp.parameters
)
pcs_pivot_motion_double_rotor()
(in
lib.frame_order.double_rotor
)
print_nice()
(in
Test_kronecker_product
)
paramag
(in
pipe_control
)
pcs_pivot_motion_full()
(in
lib.frame_order.matrix_ops
)
print_results()
(in
Frame_order_analysis
)
paramag
(in
user_functions
)
pcs_pivot_motion_full_qrint()
(in
lib.frame_order.matrix_ops
)
print_sys_info()
(in
info
)
paramag_centre
(in
lib.alignment
)
pcs_pivot_motion_rotor()
(in
lib.frame_order.rotor
)
printout()
(in
Method_of_multipliers
)
paramag_info()
(in
N_state_opt
)
pcs_pivot_motion_rotor_qrint()
(in
lib.frame_order.rotor
)
PROC
(in
test_suite.system_tests.frame_order
)
parameter_object
(in
specific_analyses.consistency_tests
)
pcs_pivot_motion_torsionless()
(in
lib.frame_order.matrix_ops
)
PROC
(in
test_suite.system_tests.model_free
)
parameter_object
(in
specific_analyses.frame_order
)
pcs_pivot_motion_torsionless_qrint()
(in
lib.frame_order.matrix_ops
)
process_click()
(in
About_base
)
parameter_object
(in
specific_analyses.jw_mapping
)
pcs_tensor()
(in
lib.alignment.pcs
)
process_result()
(in
Multi_processor
)
parameter_object
(in
specific_analyses.model_free
)
pdb_ave_pos()
(in
specific_analyses.frame_order.uf
)
processor
(in
multi
)
parameter_object
(in
specific_analyses.n_state_model
)
pdb_distribution()
(in
specific_analyses.frame_order.uf
)
Processor
(in
multi.processor
)
parameter_object
(in
specific_analyses.noe
)
pdb_geometric_rep()
(in
specific_analyses.frame_order.uf
)
Processor_box
(in
multi
)
parameter_object
(in
specific_analyses
)
pdb_model()
(in
specific_analyses.frame_order.uf
)
processor_io
(in
multi
)
parameter_object
(in
specific_analyses.relax_disp
)
pdb_read
(in
lib.structure
)
processor_name()
(in
Info_box
)
parameter_object
(in
specific_analyses.relax_fit
)
pdb_write
(in
lib.structure
)
processor_size()
(in
Processor
)
parameters
(in
specific_analyses.frame_order
)
peak_intensity
(in
gui.wizards
)
processor_size()
(in
Uni_processor
)
parameters
(in
specific_analyses.model_free
)
peak_intensity_type()
(in
pipe_control.relax_data
)
profile_module
(in
dep_check
)
parameters
(in
specific_analyses.n_state_model
)
Peak_intensity_wizard
(in
gui.wizards.peak_intensity
)
Prompt
(in
gui.relax_prompt
)
parameters
(in
specific_analyses.relax_disp
)
Peak_list
(in
lib.spectrum.objects
)
prompt
parameters
(in
specific_analyses.relax_fit
)
peak_list
(in
lib.spectrum
)
prompt()
(in
prompt.interpreter
)
params
(in
Local_tm_list
)
peak_lists
(in
test_suite.system_tests
)
prompt_colour_off()
(in
Interpreter
)
params
(in
Mf_list
)
Peak_lists
(in
test_suite.system_tests.peak_lists
)
prompt_colour_on()
(in
Interpreter
)
params
(in
Disp_model_list
)
peak_wizard_launch()
(in
Auto_noe
)
protected_exec()
(in
gui.misc
)
params
(in
Model_list
)
peak_wizard_launch()
(in
Auto_relax_disp
)
Protocol_mode_sel_window
(in
gui.analyses.auto_model_free
)
PARAMS_R20
(in
specific_analyses.relax_disp.variables
)
peak_wizard_launch()
(in
Auto_rx
)
prototype
(in
data_store
)
parse()
(in
File
)
pec
(in
lib.geometry
)
Prototype
(in
data_store.prototype
)
parse()
(in
TagTable
)
pec()
(in
lib.geometry.pec
)
prune_mol()
(in
Mol_res_spin_tree
)
parse_file()
(in
lib.software.bruker_dc
)
periodic_table
(in
lib
)
prune_res()
(in
Mol_res_spin_tree
)
parse_noe_restraints()
(in
lib.software.xplor
)
periodic_table
(in
lib.periodic_table
)
prune_spin()
(in
Mol_res_spin_tree
)
parse_noe_restraints()
(in
pipe_control.noesy
)
phi_ex
(in
lib.text.gui
)
PS1_COLOUR
(in
prompt.interpreter
)
parse_token()
(in
lib.selection
)
phi_exB
(in
lib.text.gui
)
PS1_ORIG
(in
prompt.interpreter
)
parse_version()
(in
Star_version
)
phi_exC
(in
lib.text.gui
)
PS2_COLOUR
(in
prompt.interpreter
)
part_int_daeg1_pseudo_ellipse_xx()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Cosine
)
PS2_ORIG
(in
prompt.interpreter
)
part_int_daeg1_pseudo_ellipse_yy()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Elliptic
)
PS3_COLOUR
(in
prompt.interpreter
)
part_int_daeg1_pseudo_ellipse_zz()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Iso_cone
)
PS3_ORIG
(in
prompt.interpreter
)
part_int_daeg2_pseudo_ellipse_00()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Pseudo_elliptic
)
pseudo_ellipse
(in
lib.frame_order
)
part_int_daeg2_pseudo_ellipse_04()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Pseudo_elliptic2
)
pseudo_ellipse_free_rotor
(in
lib.frame_order
)
part_int_daeg2_pseudo_ellipse_08()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Square
)
pseudo_ellipse_torsionless
(in
lib.frame_order
)
part_int_daeg2_pseudo_ellipse_11()
(in
lib.frame_order.pseudo_ellipse
)
phi_max()
(in
Zig_zag
)
Pseudo_elliptic
(in
lib.structure.cones
)
part_int_daeg2_pseudo_ellipse_13()
(in
lib.frame_order.pseudo_ellipse
)
physical_constants
(in
lib
)
Pseudo_elliptic2
(in
lib.structure.cones
)
part_int_daeg2_pseudo_ellipse_22()
(in
lib.frame_order.pseudo_ellipse
)
pipe
(in
user_functions
)
pseudoatom_loop()
(in
pipe_control.mol_res_spin
)
part_int_daeg2_pseudo_ellipse_26()
(in
lib.frame_order.pseudo_ellipse
)
pipe_bundle()
(in
Pipe_editor
)
pubmed_id
(in
Bieri11
)
part_int_daeg2_pseudo_ellipse_40()
(in
lib.frame_order.pseudo_ellipse
)
pipe_centre_of_mass()
(in
pipe_control.structure.mass
)
pubmed_id
(in
Delaglio95
)
part_int_daeg2_pseudo_ellipse_44()
(in
lib.frame_order.pseudo_ellipse
)
pipe_container
(in
data_store
)
pubmed_id
(in
Ref
)
part_int_daeg2_pseudo_ellipse_48()
(in
lib.frame_order.pseudo_ellipse
)
pipe_control
pubmed_id
(in
dAuvergneGooley03
)
part_int_daeg2_pseudo_ellipse_55()
(in
lib.frame_order.pseudo_ellipse
)
pipe_delete()
(in
Pipe_editor
)
pubmed_id
(in
dAuvergneGooley06
)
part_int_daeg2_pseudo_ellipse_57()
(in
lib.frame_order.pseudo_ellipse
)
pipe_deletion()
(in
Analysis_controller
)
pubmed_id
(in
dAuvergneGooley07
)
part_int_daeg2_pseudo_ellipse_80()
(in
lib.frame_order.pseudo_ellipse
)
PIPE_DESC
(in
pipe_control.pipes
)
pubmed_id
(in
dAuvergneGooley08a
)
part_int_daeg2_pseudo_ellipse_84()
(in
lib.frame_order.pseudo_ellipse
)
PIPE_DESC_LIST
(in
pipe_control.pipes
)
pubmed_id
(in
dAuvergneGooley08b
)
part_int_daeg2_pseudo_ellipse_88()
(in
lib.frame_order.pseudo_ellipse
)
pipe_editor
(in
gui
)
put()
(in
Immediate_result_queue
)
part_int_daeg2_pseudo_ellipse_free_rotor_00()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
Pipe_editor
(in
gui.pipe_editor
)
put()
(in
Result_queue
)
part_int_daeg2_pseudo_ellipse_free_rotor_08()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
pipe_loop()
(in
pipe_control.pipes
)
put()
(in
Threaded_result_queue
)
part_int_daeg2_pseudo_ellipse_free_rotor_11()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
pipe_names()
(in
pipe_control.pipes
)
PY_FILE_EXTENSION
(in
test_suite.unit_tests.unit_test_runner
)
part_int_daeg2_pseudo_ellipse_free_rotor_44()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
pipe_switch()
(in
Analysis_controller
)
py_to_gui()
(in
gui.string_conv
)
part_int_daeg2_pseudo_ellipse_free_rotor_48()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
pipe_switch()
(in
Pipe_editor
)
PY_VER
(in
test_suite.system_tests.frame_order
)
part_int_daeg2_pseudo_ellipse_free_rotor_80()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
PipeContainer
(in
data_store.pipe_container
)
PY_VER
(in
test_suite.system_tests.model_free
)
part_int_daeg2_pseudo_ellipse_free_rotor_88()
(in
lib.frame_order.pseudo_ellipse_free_rotor
)
pipes
(in
pipe_control
)
PY_VERSION
(in
lib.compat
)
part_int_daeg2_pseudo_ellipse_torsionless_00()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
pipes
(in
test_suite.gui_tests
)
Pymol
(in
pipe_control.pymol_control
)
part_int_daeg2_pseudo_ellipse_torsionless_04()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
Pipes
(in
test_suite.gui_tests.pipes
)
pymol
(in
specific_analyses.model_free
)
part_int_daeg2_pseudo_ellipse_torsionless_08()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
pipes
(in
test_suite.system_tests
)
Pymol
(in
specific_analyses.model_free.pymol
)
part_int_daeg2_pseudo_ellipse_torsionless_11()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
Pipes
(in
test_suite.system_tests.pipes
)
pymol_control
(in
pipe_control
)
part_int_daeg2_pseudo_ellipse_torsionless_22()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
pivot()
(in
specific_analyses.frame_order.uf
)
pymol_control
(in
user_functions
)
part_int_daeg2_pseudo_ellipse_torsionless_44()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
Pivot_finder
(in
target_functions.ens_pivot_finder
)
pymol_macro()
(in
API_base
)
part_int_daeg2_pseudo_ellipse_torsionless_48()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
pivot_fixed()
(in
specific_analyses.frame_order.data
)
pymol_macro()
(in
Pymol
)
part_int_daeg2_pseudo_ellipse_torsionless_55()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
plot_disp_curves()
(in
specific_analyses.relax_disp.data
)
pymol_module
(in
dep_check
)
part_int_daeg2_pseudo_ellipse_torsionless_88()
(in
lib.frame_order.pseudo_ellipse_torsionless
)
plot_exp_curves()
(in
specific_analyses.relax_disp.data
)
pymol_obj
(in
pipe_control.pymol_control
)
partition_params()
(in
pipe_control.value
)
plotting
(in
pipe_control
)
PyOnDemandOutputWindow
paths_from_test_module()
(in
Unit_test_runner
)
Polak_ribiere
(in
minfx.polak_ribiere_cg
)
pystarlib
(in
bmrblib
)
pattern_d_quote
(in
bmrblib.pystarlib.Text
)
polak_ribiere()
(in
minfx.polak_ribiere_cg
)
pattern_double_qoute
(in
bmrblib.pystarlib.Text
)
polak_ribiere_cg
(in
minfx
)
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