2009/12/13 Ed Olejniczak <edward.t.olejniczak@xxxxxxxxxxxxxx>:
(1) I ran through the protocol and generated in the aic directory a
xml file.
How do I view it?
Hi,
I just received this earlier email. Maybe I can answer your questions
a bit more than last time. You can download and install an XML
viewing program if you wish. Or you can use the results.read() user
function to read the file back into relax, and then the
value.display() or value.write() user functions to display or save the
individual values. Note that the XML file contains 100% of the
information from your analysis.
The fact that you would like to open a file in the 'aic' directory
sounds like you are not using the full_analysis.py script. If this is
the case and you are new to model-free analysis, I suggest you read my
papers:
http://www.nmr-relax.com/refs.html#dAuvergneGooley03
http://www.nmr-relax.com/refs.html#dAuvergneGooley06
http://www.nmr-relax.com/refs.html#dAuvergneGooley07
http://www.nmr-relax.com/refs.html#dAuvergneGooley08a
http://www.nmr-relax.com/refs.html#dAuvergneGooley08b
minimally, the last 3. These will explain all the intricacies of how
I have been revolutionising the data analysis side of model-free, and
why you should use the new model-free protocol in the full_analysis.py
script rather than using the past solution to the chicken or egg
question of using an initial diffusion tensor estimate.
(2) I ran latex_mf_table.py and gnerated a tex file input=aic/
results output= results.tex
How do I view this latex file? I have tried pdflatex , latex they
all find errors in the file.
Did you try including it in a LaTeX document? Have you used LaTeX
before? Did you try my suggestions in the post at
https://mail.gna.org/public/relax-users/2009-12/msg00029.html ?
(3) When I run the protocols all of the "grace" view operations show
a graph with the wrong limits.
To change the limits, see
https://mail.gna.org/public/relax-users/2009-12/msg00029.html. Oh, I
just looked into your Grace file. This file is not properly generated
- this was a bug fixed in relax 1.3.4. See
https://gna.org/forum/forum.php?forum_id=2108. To obtain valid Grace
files, please switch to this version or use the bleeding edge
repository version. Note that relax 1.3.4 includes about 1 years
worth of improvements over 1.3.3! If you have sys admin nightmares,
note that relax can be installed as a user (if a relax version is
already installed, all the dependencies should already be installed so
the hard part is done).
I hope this helps.
Regards,
Edward
Re: Displaying output from Model free analysis